TABLE 2.

Proportions of infants and mothers harboring amino acid residues in Gag significantly associated with altered replication capacity (P < 0.05; q < 0.2)

Protein	Type of association with replication capacity	Codon	Amino acid	Consensus sequence amino acid	P value determined by a Mann-Whitney U test	q value	No. of infants harboring amino acid/total no. of infants	No. of transmitter mothers harboring amino acid/total no. of transmitter mothers	P value determined by Fisher's exact test
Gag p17	Positive	7	V	I	0.00008	0.01572	11/46	12/45	0.81
Gag p17	Negative	7	I	I	0.00008	0.01572	34/46	32/45	0.82
Gag p17	Negative	28	H	H	0.00209	0.164274	21/46	20/45	1
Gag p17	Positive	62	T	K	0.00101	0.13231	5/46	6/45	0.76
Gag p17	Positive	90	K	E	0.00175	0.164274	11/46	13/45	0.64
Gag p17	Positive	28	Q	H	0.04306	0.623167	3/46	9/45	0.07