Table 1.
Polymorphism information content (PIC) values and positions in the gene for nucleotide polymorphisms in HvP5CS1.
No. | Nucleotide changea | PIC | Positionb | No. | Nucleotide changea | PIC | Positionb |
---|---|---|---|---|---|---|---|
1 | A98G | 0.014 | Intron | 22 | T570 | 0.342 | Exon |
2 | G150T | 0.434 | Intron | 23 | GCA573 | 0.334 | Exon |
3 | C162T | 0.014 | Intron | 24 | GC577 | 0.342 | Exon |
4 | C174T | 0.079 | Intron | 25 | TGTCTC581 | 0.342 | Exon |
5 | G288A | 0.448 | Intron | 26 | TGTCTC581:TGT | 0.014 | Exon |
6 | T302C | 0.261 | Intron | 27 | TTATA588 | 0.342 | Exon |
7 | G305A | 0.134 | Intron | 28 | G656A | 0.028 | Exon |
8 | G315T | 0.014 | Intron | 29 | T697C | 0.047 | NC |
9 | CAA354 | 0.302 | Intron | 30 | T735TT | 0.483 | NC |
10 | TATAT358 | 0.302 | Intron | 31 | C736CT | 0.483 | NC |
11 | TTCT365 | 0.302 | Intron | 32 | C737CC | 0.483 | NC |
12 | T537 | 0.437 | Intron | 33 | G768C | 0.398 | NC |
13 | G539 | 0.437 | Intron | 34 | T778A | 0.014 | NC |
14 | A541 | 0.437 | Intron | 35 | G846AT | 0.479 | NC |
15 | ATT543 | 0.437 | Intron | 36 | C847CG | 0.479 | NC |
16 | TG555 | 0.014 | Intron | 37 | T848TT | 0.479 | NC |
17 | AT558 | 0.014 | Intron | 38 | C847T | 0.302 | NC |
18 | T564 | 0.014 | Intron | 39 | T917C | 0.134 | NC |
19 | T566 | 0.014 | Intron | 40 | T920G | 0.274 | NC |
20 | TCT568 | 0.014 | Exon | 41 | T926C | 0.047 | NC |
21 | CA578 | 0.014 | Exon |
aThe first letter indicates wild type nucleotide at mutation site from the reference DNA (ICARDA IG: 138264), followed by the position of the mutation based on PCR amplicon in reference DNA, and followed by mutated nucleotide from tested sample DNA. b“NC” = “no-coding”.