Table 2.

Genome sequences of C. burnetii strains obtained from NCBI database for phylogenetic analysis and their in silico MLVA genotype.

Strain	Accession no.	Source	In silico MLVA	Genome (bp)	Plasmid type	References
NMRSA493c	NC_002971.3	Tick	NM	1,995,281	QpH1	Beare et al., 2009
Cb175c	HG825990.3	Human	NM	1,989,565	QpH1	D'Amato et al., 2015
Cb185d	NZ_CBTH000000000.1	–	NM	1,991,515	unknown	–
Z3055c	PRJEB1438	Sheep	*	1,995,463	QpH1	D'Amato et al., 2014
Cb109d	AKYP00000000	Human	CbNL01	2,030,000	QpH1	Rouli et al., 2012
EV-Cb_C13d	CCAM01000000	Ruminant	CbNL01	2,023,172	unknown	Sidi-Boumedine et al., 2014
NL-Limburgd	JZWL00000000	Human	CbNL01	2,214,254	QpH1	Hammerl et al., 2015
Cb_B1d	CCAH01000000	Ruminant	CbNL12	2,008,014	QpH1	Sidi-Boumedine et al., 2014
EV-Cb_BK10d	CCAL01000000	Ruminant	CbNL12	1,999,727	unknown	Sidi-Boumedine et al., 2014
Cb_B18d	CCAI01000000	Ruminant	CbNL12	2,008,445	unknown	Sidi-Boumedine et al., 2014
CbRSA331c	NC_010117.1	Human	CbRSA331	2,016,427	QpH1	–
Dugwayc	NC_009727.1	Rodents	Dugway	2,158,758	QpDG	Beare et al., 2009
CbuG_Q212c	NC_011527.1	Human	CbuG_Q212	2,008,870	integrated	Beare et al., 2009
CbuK_Q154c	NC_011528.1	Human	CbuK_Q154	2,063,100	QpRS	Beare et al., 2009
Q321d	AAYJ01000000	Cattle	Q321	2,004,584	QpDV	Beare et al., 2006
Goat Q177d	NZ_AAUP00000000.2	Goat	Goat Q177	2,090,565	QpRS	–
Cb_O184d	CCAK01000000	Ruminant	Cb_O184	2,168,222	QpRS	Sidi-Boumedine et al., 2014
Namibiad	CP007555	Goat	Namibia	2,101,438	QpRS	Walter et al., 2014a
AuQ01d	JPVV00000000	Human	AuQ01	2,073,000	QpRS	Walter et al., 2014b

^cComplete genome sequence.

^dDraft genome sequence.

^*In silico MLVA genotype more similar to NM genotype.

–Information not available.

Integrated, plasmid sequences integrated in chromosome.

Unknown, plasmid type not known for these C. burnetii strains.