Table 3.
Loci with Multiple Mutations
| No. Synonymous SNPs | No. Nonsynonymous SNPs | No. Deletions | Annotations | Notes | |
|---|---|---|---|---|---|
| Deviations from DSM639 | |||||
| Saci_0266 | 0 | 3 | 0 | Phosphate transport regulator (distant homolog of PhoU) | |
| Saci_0783 | 0 | 3 | 0 | NAD (FAD)-dependent dehydrogenase | |
| Saci_1127 | 0 | 0 | 0 | Amino acid permease | |
| Variation within YNP 2012 Population | |||||
| Saci_1274 | 0 | 2 | 0 | Uncharacterized membrane protein, required for N-linked glycosylation | Both variable within the NG population |
| Saci_1320 | 0 | 7 (one nonsense) | 2 | ATP dependent helicase | All singletons in the NG population |
| Saci_2317 | 0 | 2 | 0 | Type IV secretory pathway archaeal flagella biosynthesis | Three alleles in the GG population |
Note.—All genes are listed as annotated in Sulfolobus acidocaldarius DSM 639.