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. 2005 Feb 14;6:30. doi: 10.1186/1471-2105-6-30

Figure 1.

Figure 1

A sample protein conformation in the 2D HP model. The underlying protein sequence (Sequence S1-1 from Table 1)is HPHPPHHPHPPHPHHPPHPH; black circles represent hydrophobic amino acids, while white circles symbolise polar amino acids. The dotted lines represents the H-H contacts underlying the energy calculation. The energy of this conformation is -9, which is optimal for the given sequence.