Table 3. Putative genes at the S40 locus for RD23 based on BAC clones of cv. 93-11 and Nipponbare.
| ORF | Gramene locus ID | MSU locus ID | Predicted protein function |
|---|---|---|---|
| 1 | BGIOSGA001908 | LOC_Os01g16700 | Retrotransposon protein, putative, LINE subclass, expressed |
| 2 | BGIOSGA003243 | Expressed protein | |
| 3 | BGIOSGA003244 | LOC_Os01g16714 | Flavin monooxygenase, putative, expressed |
| 4 | BGIOSGA003245 | LOC_Os01g16714 | Flavin monooxygenase, putative, expressed |
| 5 | BGIOSGA003246 | LOC_Os01g16730 | Ulp1 protease family, C-terminal catalytic domain-containing protein, expressed |
| 6 | BGIOSGA003247 | LOC_Os01g16750 | Flavin monooxygenase, putative, expressed |
| 7 | BGIOSGA003248 | LOC_Os01g16770 | Expansin precursor, putative, expressed |
| 8 | BGIOSGA001907 | LOC_Os01g16810 | MYB family transcription factor, putative, expressed |
Abbreviations: MSU, Michigan State University; ORF, open reading frame; Ulp, ubiquitin-like SUMO protease 1.