Table 1. Markers significant for water-soluble carbohydrate concentration at >1 experiment for the DArT marker set.
| Experiments | Marker | Chromosome | Distance (cM) | P-Value Range | Minor Allele Frequency | FDR Value Range | Nearby Genes |
|---|---|---|---|---|---|---|---|
| 09COLE_RFD, 09YANA_RFD | wPt-9592 | 1A | 68.3 | 0.000520–0.000789 | 0.491 | 0.0725–0.0999 | |
| 09COLE_RFD, 09YANA_RFD | wPt-665784 | 1A | 69.2 | 0.000557–0.0006277 | 0.474 | 0.0725–0.0923 | |
| 09COLE_RFD, 09YANA_RFD | wPt-7359 | 1B | 11.3 | 6.97 × 10−5 – 9.73 × 10−5 | 0.107 | 0.0228–0.0323 | |
| 09COLE_RFD, 09YANA_RFD | wPt-666719 | 1D | 83.1 | 1.56 × 10−5 – 2.97 × 10−5 | 0.278 | 0.00784–0.0193 | Glu-D1 |
| 09COLE_RFD, 09YANA_RFD | wPt-3743 | 1D | 83.3 | 1.58 × 10−5 – 3.88 × 10−5 | 0.275 | 0.00784–0.0193 | Glu-D1 |
| 09COLE_RFD, 09YANA_RFD | wPt-733835 | 1D | 86.5 | 0.000205–9.16 × 10−5 | 0.285 | 0.0228–0.0510 | Glu-D1 |
| 09COLE_RFD, 09YANA_RFD | wPt-797974 | 2D | 41.1 | 0.000519–0.000607 | 0.378 | 0.0725–0.0923 | Ppd-D1 |
| 09COLE_RFD, 09YANA_RFD | wPt-800147 | 4A | 62.7 | 0.000804–0.000527 | 0.327 | 0.0725–0.0999 |
No SNP markers showed significantly associations. Experiment is given as year-site-irrigation treatment. Chromosome and position are from the consensus map. Nearby genes are from CMAP GrainGene database (http://wheat.pw.usda.gov/cmap/) searches within the LD blocks estimated for each genome. Association analyses returned significant markers for the two water deficit environments (2009 Coleambally and Yanco Rainfed), and not any of the well-watered environment experiments.