Table 2. Markers significant for relative maturity at >1 experiment for the DArT and SNP marker datasets.
| Experiments | Marker | Chromosome | Distance (cM) | P-Value Range | Minor Allele Frequency | FDR Value Range | Nearby Genes |
|---|---|---|---|---|---|---|---|
| 10COLE_IRR, 10COLE_RFD, 10YANA_IRR | wPt-730744 | 2D | 73.0 | 4.85 × 10−5 – 7.91 × 10‑5 | 0.161 | 0.0482–0.0787 | Ppd-D1 |
| 09COLE_IRR, 09COLE_RFD, 09YANA_IRR, 09YANA_RFD, 10COLE_IRR, 10COLE_RFD, 10YANA_IRR, 10YANA_RFD | wsnp_CAP12_c812_428290 (IWA989) | 2D | 57.9 | 3.91 × 10−16 – 1.414 × 10−14 | 0.134 | 1.50 × 10−12 – 5.41 × 10−11 | Ppd-D1 |
| 09YANA_IRR, 09YANA_RFD | wsnp_BE422566B_Ta_1_2 (IWA76) | 4B | 43.3 | 0.000169–0.000171 | 0.0582 | 0.0498–0.0507 | |
| 09COLE_IR, 09COLE_RFD, 09YANA_IRR, 09YANA_RFD, 10COLE_IRR, 10COLE_RFD, 10YANA_IRR, 10YANA_RFD | wsnp_AJ612027A_Ta_2_1 (IWA1) | 5A | 66.2 | 6.30 × 10−9 – 3.74 × 10−6 | 0.360 | 1.20 × 10−5 – 0.00410 | Vrn-A1 |
| 09COLE_IRR, 09COLE_RFD, 09YANA_IRR, 09YANA_RFD, 10COLE_IRR | wsnp_AJ612027A_Ta_2_5 (IWA2) | 5A | 66.2 | 1.29 × 10−5 – 0.000219 | 0.151 | 0.00619–0.0764 | Vrn-A1 |
| 09COLE_RFD, 09YANA_IRR, 09YANA_RFD | wsnp_BE404341A_Ta_2_3 (IWA46) | 5A | 66.7 | 6.07 × 10−5 – 0.000105 | 0.136 | 0.0258–0.0446 | Vrn-A1 |
| 09COLE_IRR, 09COLE_RFD, 09YANA_IRR, 09YANA_RFD, 10COLE_IRR, 10COLE_RFD, 10YANA_IRR, 10YANA_RFD | wsnp_BF293620A_Ta_2_1 (IWA454) | 5A | 66.2 | 1.19 × 10−6 – 0.000215 | 0.150 | 0.000909–0.0937 | Vrn-A1 |
| 09COLE_IRR, 09COLE_RFD, 09YANA_IRR, 09YANA_RFD, 10COLE_IRR, 10COLE_RFD, 10YANA_IRR, 10YANA_RFD | wsnp_BJ224975A_Ta_2_1 (IWA589) | 5A | 66.2 | 1.53 × 10−8 – 4.29 × 10−6 | 0.357 | 1.47 × 10−5 – 0.00410 | Vrn-A1 |
| 09COLE_RFD, 09YANA_IRR, 09YANA_RFD | wsnp_BJ224975A_Ta_2_2 (IWA590) | 5A | 66.2 | 7.20 × 10−5 – 0.000118 | 0.140 | 0.0276–0.0450 | Vrn-A1 |
| 09COLE_IRR, 09COLE_RFD, 09YANA_IRR, 09YANA_RFD, 10COLE_IRR, 10COLE_RFD, 10YANA_IRR, 10YANA_RFD | wsnp_Ex_c22727_31934296 (IWA2743) | 5A | 66.7 | 9.26 × 10−10 – 6.31 × 10−7 | 0.359 | 1.77 × 10−6 – 0.00121 | Vrn-A1 |
| 09COLE_RFD, 09YANA_IRR, 09YANA_RFD | wsnp_Ex_c31799_40545376 (IWA3362) | 5A | 69.1 | 0.000154–0.000243 | 0.369 | 0.0490–0.0581 | Vrn-A1 |
| 09COLE_IRR, 09COLE_RFD, 09YANA_IRR, 09YANA_RFD, 10COLE_IRR, 10COLE_RFD | wsnp_Ex_c31799_40545478 (IWA3363) | 5A | 69.1 | 1.74 × 10−6 – 0.000195 | 0.379 | 0.0009498–0.0747 | Vrn-A1 |
| 09COLE_IRR, 09COLE_RFD, 09YANA_IRR, 09YANA_RFD, 10COLE_IRR, 10COLE_RFD | wsnp_Ex_c7729_13177883 (IWA4719) | 5A | 69.1 | 1.43 × 10−6 – 0.000152 | 0.379 | 0.000911–0.0647 | Vrn-A1 |
| 09COLE_RFD, 09YANA_IRR, 09YANA_RFD | wsnp_Ex_rep_c66689_65010988 (IWA5287) | 5A | 66.7 | 0.000126–0.000203 | 0.400 | 0.0438–0.0518 | Vrn-A1 |
| 09YANA_IRR, 09YANA_RFD, 10COLE_IRR, 10COLE_RFD, 10YANA_IRR, 10YANA_RFD | wsnp_Ex_c12048_19288999 (IWA1577) | 5B | 71.1 | 3.83 × 10−5 – 0.000223 | 0.266 | 0.0291–0.0533 | Vrn-B1 |
| 09YANA_IRR, 09YANA_RFD | wsnp_Ra_c20970_30293078 (IWA7732) | 5B | 71.1 | 0.000332–0.000433 | 0.272 | 0.0747–0.0976 | Vrn-B1 |
| 10YANA_IRR, 10YANA_RFD | wsnp_Ra_c20970_30293227 (IWA7733) | 5B | 71.1 | 6.16 × 10−5 – 0.000183 | 0.262 | 0.0383–0.0499 | Vrn-B1 |
| 10YANA_IRR, 10YANA_RFD | wsnp_Ex_c508_1008029 (IWA4087) | 5D | 61.0 | 3.90 × 10−5 – 0.000332 | 0.202 | 0.0258–0.0978 | Vrn-D1 |
Experiment is given as year-site-irrigation treatment. Chromosome and position are from the consensus maps. Nearby genes are from CMAP GrainGene database (http://wheat.pw.usda.gov/cmap/) searches within the LD blocks estimated for each genome.