Table 2.
Genes highly expressed in primed seeds of short longevity genotypes (bulked-short RILs and Col-0).
| Gene ID | Gene expression level (Normalized read counts) | Annotation | Overlapped QTL | |||
|---|---|---|---|---|---|---|
| SRa | LRb | Col-0 | Est-1 | |||
| AT1G01300 | 265.8 | 172.7 | 300.9 | 162.9 | Eukaryotic aspartyl protease family protein | —c |
| AT1G03106 | 797.5 | 513.7 | 927.2 | 455.4 | Unknown protein | — |
| AT1G12650 | 44.0 | 14.3 | 55.3 | 4.3 | Unknown protein | chr 1 |
| AT1G12805 | 240.2 | 101.2 | 496.9 | 77.1 | Nucleotide binding protein | chr 1 |
| AT1G19540 | 235.6 | 93.5 | 309.4 | 76.1 | NmrA-like negative transcriptional regulator family protein | chr 1 |
| AT1G20390 | 62.3 | 9.9 | 73.1 | 0.0 | Gypsy-like retrotransposon | chr 1 |
| AT1G22110 | 138.4 | 73.7 | 302.8 | 114.6 | Structural constituent of ribosome | — |
| AT1G27340 | 99.0 | 46.2 | 74.1 | 61.1 | LCR (leaf curing responsiveness) | — |
| AT1G68560 | 268.6 | 141.9 | 237.2 | 49.3 | TRG1 (thermoinhibition resistant1) | — |
| AT1G69530 | 766.3 | 454.3 | 1154.1 | 173.6 | EXPA1 (expansin A1) | — |
| AT1G80530 | 238.3 | 149.6 | 229.7 | 186.4 | Major facilitator superfamily protein | — |
| AT2G10410 | 286.9 | 156.2 | 410.6 | 0.0 | SADHU1-1 (sadhu non-coding retrotransposon1-1) | — |
| AT2G14878 | 610.5 | 212.3 | 1054.7 | 9.6 | Non-coding RNA | — |
| AT2G14960 | 61.4 | 26.4 | 37.5 | 13.9 | GH3.1 (Protein similar to IAA-amido synthases) | — |
| AT2G16880 | 76.1 | 36.3 | 58.1 | 46.1 | Pentatricopeptide repeat superfamily protein | — |
| AT2G20670 | 33.0 | 8.8 | 17.8 | 8.6 | DUF506 (Protein of unknown function) | — |
| AT2G45400 | 18.3 | 2.2 | 15.9 | 4.3 | BEN1 (BRI1-5 ENHANCED1) | chr 2 |
| AT2G45510 | 256.7 | 166.1 | 239.1 | 159.6 | CYP704A2 | chr 2 |
| AT2G45560 | 246.6 | 134.2 | 298.1 | 48.2 | CYP76C1 | chr 2 |
| AT2G46450 | 55.0 | 22.0 | 101.3 | 2.1 | CNGC12 (cyclic nucleotide-gated channel12) | chr 2 |
| AT3G09210 | 83.4 | 38.5 | 56.3 | 34.3 | PTAC13 (plastid transcriptionally active13) | — |
| AT3G19820 | 74.3 | 27.5 | 58.1 | 48.2 | DWF1 (DWARF1) | — |
| AT3G27770 | 129.3 | 67.1 | 120.9 | 51.4 | Unknown protein | — |
| AT3G42052 | 19.3 | 2.2 | 16.9 | 0.0 | Gypsy-like retrotransposon | — |
| AT3G43580 | 63.3 | 20.9 | 45.9 | 0.0 | Beta-galactosidase related protein | — |
| AT3G43955 | 61.4 | 20.9 | 53.4 | 0.0 | Copia-like retrotransposon | — |
| AT3G44430 | 136.6 | 36.3 | 165.0 | 0.0 | Unknown protein | — |
| AT3G46000 | 221.8 | 138.6 | 190.3 | 122.1 | ADF2 (actin depolymerizing factor2) | chr 3 |
| AT3G46610 | 80.7 | 36.3 | 92.8 | 16.1 | Pentatricopeptide repeat superfamily protein | chr 3 |
| AT3G47350 | 82.5 | 27.5 | 85.3 | 0.0 | HSD2 (hydroxysteroid dehydrogenase2) | chr 3 |
| AT4G08950 | 193.4 | 105.6 | 41.3 | 30.0 | EXO (exordium) | — |
| AT4G10390 | 30.3 | 7.7 | 21.6 | 10.7 | Protein kinase superfamily protein | — |
| AT4G36880 | 1181.6 | 716.1 | 1543.1 | 313.9 | CP1 (cysteine proteinase1) | — |
| AT5G05290 | 102.7 | 35.2 | 134.1 | 8.6 | EXPA2 (expansin A2) | — |
| AT5G11420 | 345.6 | 192.5 | 354.4 | 75.0 | DUF642 (protein of unknown function) | — |
aSR; bulked-short RILs. bLR; bulked-long RILs. cNo overlap with the QTLs.