Skip to main content
. Author manuscript; available in PMC: 2017 Aug 15.
Published in final edited form as: Structure. 2017 Apr 20;25(5):773–782.e5. doi: 10.1016/j.str.2017.03.015
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
goat anti-human Fab secondary antibody Thermo Scientific Pierce Cat # PA5-33290
Bacterial and Virus Strains
E. coli BL21 Gold(DE3) cells Agilent Cat# 230132
HEK 293T cells ATCC ATCC 11268
TZM-bl cells NIH ARRRP NIH ARRRP 8129
Chemicals, Peptides, and Recombinant Proteins
BanLec This paper N/A
gp120 (JR-CSF & Bal) This paper N/A
TEV protease This paper N/A
Ampicillin Sigma-Aldrich Cat# A0166
Kanamycin Sigma-Aldrich Cat# K1377
anthranliamide Sigma-Aldrich Cat# A89804
ammonium acetate Sigma-Aldrich Cat# A2706
IPTG Sigma-Aldrich Cat# I5502
kifunensine Sigma-Aldrich Cat# K1140
Protease inhibitor cocktail Roche Cat# 05056489001
luciferase substrate Promega Cat# E1500
PNGase F New England BioLabs Cat# P0705S
Critical Commercial Assays
Phusion High-Fidelity PCR kit New England BioLabs Cat# E0553
Qiagen Gel Extraction kit Qiagen Cat# 28704
In-Fusion HD Cloning Kit Clontech Cat# 639648
Deposited Data
BanLec dimer This paper PDB: 5EXG
Oligonucleotides
Primers for BanLec D38G
Forward:
GTGACATCAACACCGCCAACCACATCGCCAC
Reverse: GTGGCGATGTGGTTGGCGGTGTTGATGTCAC
This paper N/A
Primers for BanLec D133G
Forward:
GATAGACACCAATGGCACCCAGGAATTTACCACCA
Reverse:
TGGTGGTAAATTCCTGGGTGCCATTGGTGTCTATC
This paper N/A
Primers for BanLec H84T
Forward:
TGCTAACTACACCGGTGCGGTCGTGC
Reverse:
ACTTCACCTGCCATGCCC
This paper N/A
Primers for BanLec Y46K
Forward:
Forward:
CACCTTCACGAAATACGGCAAAAC
Reverse:
ACATCAACACCGTCAACC
This paper N/A
REAGENT or RESOURCE SOURCE IDENTIFIER
Recombinant DNA
BanLec template DNA Clonetech (based on Peumans et al., 2000) N/A
Plasmid: pET28b Merck-Millipore Cat# 69864
Software and Algorithms
UniDec Marty et al., 2015 unidec.chem.ox.ac.uk.
Empower 3.0 Waters N/A
Masslynx v4.1 Waters N/A
Astra 6.1 software Wyatt Technologies N/A
ATSAS Svergun et al., 2001 https://www.embl-hamburg.de/biosaxs/software.html
Situs Wriggers and Chacon, 2001 http://situs.biomachina.org/fguide.html
Coot Emsley et al., 2010 http://www.ccp4.ac.uk/
Phaser McCoy et al., 2007 http://www.phaser.com/
Impact Marklund et al., 2015 http://impact.chem.ox.ac.uk/
GLYCAM-Web Kirschner et al., 2008 www.glycam.org
Amber14SB Case et al., 2014 http://ambermd.org/
Other
HisTrap HP column GE Healthcare Cat# 17-5248-02
Superose 6 Increase 10/300 column GE Healthcare Cat# 29-0915-96
Vivaspin 5000 MWCO filter GE Healthcare Cat# 28932223
SDS-PAGE gel Novex NuPAGE Cat# NW04120
Microtitre ELISA plates Corning Cat# 3369
LudgerSep N2 amide HPLC column Ludger Ltd. Cat# LS-N2-4.6x150
Bio SEC-3 SEC column Agilent Cat# 5190-2504
Bio-spin 6 centrifuge columns Bio-Rad Cat# 7326221