REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
goat anti-human Fab secondary antibody | Thermo Scientific Pierce | Cat # PA5-33290 |
Bacterial and Virus Strains | ||
E. coli BL21 Gold(DE3) cells | Agilent | Cat# 230132 |
HEK 293T cells | ATCC | ATCC 11268 |
TZM-bl cells | NIH ARRRP | NIH ARRRP 8129 |
Chemicals, Peptides, and Recombinant Proteins | ||
BanLec | This paper | N/A |
gp120 (JR-CSF & Bal) | This paper | N/A |
TEV protease | This paper | N/A |
Ampicillin | Sigma-Aldrich | Cat# A0166 |
Kanamycin | Sigma-Aldrich | Cat# K1377 |
anthranliamide | Sigma-Aldrich | Cat# A89804 |
ammonium acetate | Sigma-Aldrich | Cat# A2706 |
IPTG | Sigma-Aldrich | Cat# I5502 |
kifunensine | Sigma-Aldrich | Cat# K1140 |
Protease inhibitor cocktail | Roche | Cat# 05056489001 |
luciferase substrate | Promega | Cat# E1500 |
PNGase F | New England BioLabs | Cat# P0705S |
Critical Commercial Assays | ||
Phusion High-Fidelity PCR kit | New England BioLabs | Cat# E0553 |
Qiagen Gel Extraction kit | Qiagen | Cat# 28704 |
In-Fusion HD Cloning Kit | Clontech | Cat# 639648 |
Deposited Data | ||
BanLec dimer | This paper | PDB: 5EXG |
Oligonucleotides | ||
Primers for BanLec D38G Forward: GTGACATCAACACCGCCAACCACATCGCCAC Reverse: GTGGCGATGTGGTTGGCGGTGTTGATGTCAC |
This paper | N/A |
Primers for BanLec D133G Forward: GATAGACACCAATGGCACCCAGGAATTTACCACCA Reverse: TGGTGGTAAATTCCTGGGTGCCATTGGTGTCTATC |
This paper | N/A |
Primers for BanLec H84T Forward: TGCTAACTACACCGGTGCGGTCGTGC Reverse: ACTTCACCTGCCATGCCC |
This paper | N/A |
Primers for BanLec Y46K Forward: Forward: CACCTTCACGAAATACGGCAAAAC Reverse: ACATCAACACCGTCAACC |
This paper | N/A |
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
Recombinant DNA | ||
BanLec template DNA | Clonetech (based on Peumans et al., 2000) | N/A |
Plasmid: pET28b | Merck-Millipore | Cat# 69864 |
Software and Algorithms | ||
UniDec | Marty et al., 2015 | unidec.chem.ox.ac.uk. |
Empower 3.0 | Waters | N/A |
Masslynx v4.1 | Waters | N/A |
Astra 6.1 software | Wyatt Technologies | N/A |
ATSAS | Svergun et al., 2001 | https://www.embl-hamburg.de/biosaxs/software.html |
Situs | Wriggers and Chacon, 2001 | http://situs.biomachina.org/fguide.html |
Coot | Emsley et al., 2010 | http://www.ccp4.ac.uk/ |
Phaser | McCoy et al., 2007 | http://www.phaser.com/ |
Impact | Marklund et al., 2015 | http://impact.chem.ox.ac.uk/ |
GLYCAM-Web | Kirschner et al., 2008 | www.glycam.org |
Amber14SB | Case et al., 2014 | http://ambermd.org/ |
Other | ||
HisTrap HP column | GE Healthcare | Cat# 17-5248-02 |
Superose 6 Increase 10/300 column | GE Healthcare | Cat# 29-0915-96 |
Vivaspin 5000 MWCO filter | GE Healthcare | Cat# 28932223 |
SDS-PAGE gel | Novex NuPAGE | Cat# NW04120 |
Microtitre ELISA plates | Corning | Cat# 3369 |
LudgerSep N2 amide HPLC column | Ludger Ltd. | Cat# LS-N2-4.6x150 |
Bio SEC-3 SEC column | Agilent | Cat# 5190-2504 |
Bio-spin 6 centrifuge columns | Bio-Rad | Cat# 7326221 |