Table 1.
DNA-binding protein | Binding unit | Binding-site restrictions | Nuclease | Successful use in primary T cells? | Commercially available? |
---|---|---|---|---|---|
ZFN | Each finger binds 3 bp of DNA | Two different adjacent sites separated by a spacer, guanine-rich; binding is context dependent, and limited specificities are available | FokI dimer | Yes | Yes |
TALEN | Each TALE repeat binds 1 bp of DNA | Two different adjacent sites separated by a spacer, T at the 5′ end of target sequences | FokI dimer | Yes | Yes |
MegaTAL | Combination of TALE repeats and meganuclease | Meganuclease target site must be present | Meganuclease | Yes | No |
Cas9 | 20 bp of a RNA-DNA hybrid | 3 bp of PAM immediately following the target site | Cas9 | Yes | Yes |
Abbreviations: Cas9, clustered regularly interspaced short palindromic repeats associated protein 9; megaTAL, a synthetic protein that is a combination of TALE DNA binding domains and a meganuclease; PAM, protospacer-adjacent motif; TALE, transcription activator-like effector; TALEN, transcription activator-like effector nuclease; ZFN, zinc finger nuclease.