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. Author manuscript; available in PMC: 2018 Sep 1.
Published in final edited form as: Biochim Biophys Acta. 2017 Jun 4;1861(9):2218–2227. doi: 10.1016/j.bbagen.2017.06.001

Table 3. Identification of Carbon Fixation Cluster.

Gene identifiers and annotations of the carbon fixation (dicarboxylate/4-hydroxybutyrate cycle) cluster identified in the I. hospitalis culture STRING interaction map (Figure 2).

I. hospitalis Culture
Gene Identifier Annotation Type
Igni_0944 N2-acetyl-L-lysine aminotransferase t
N2-Acetyl-L-Lysine m
Igni_0945 Hypothetical protein t
Igni_0445 Succinate dehydrogenase iron-sulfur subunit m
Igni_0085 Succinyl-CoA synthetase (ADP-forming) alpha subunit t
Igni_0086 Succinyl-CoA synthetase (ADP-forming) beta subunit t
Succinate m
Igni_0315 Acetylornithine deacetylase p
L-Ornithine m
Igni_0363 Hypothetical protein t
Igni_1361 Glucokinase p
Igni_0415 Glucose-6-phosphate isomerase t
Igni_0678 Fumarase
Fumarate m
Igni_1079 Deoxyribose-phosphate aldolase t,p
Igni_0257 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase-like protein t
Igni_0256 AMP-dependent synthetase and ligase t,p
Igni_0983 Isopropylmalate/citramalate/homocitrate synthase p
Igni_1256 Pyruvate/ketoisovalerate oxidoreductase, gamma subunit t
Igni_0728 N-acetyl-gamma-glutamyl-phosphate reductase t
Igni_1387 Ornithine carbamoyltransferase t
L-Ornithine m
L-Citrulline m
Igni_0171 Glutamine–fructose-6-phosphate transaminase t
Igni_1430 Argininosuccinate lyase t
Fumarate m
Igni_0635 Argininosuccinate synthase
L-Citrulline m

Note: Gene/proteins are listed by Ignicoccus gene identifiers with corresponding annotations. Metabolites are listed below enzymes that utilize or produce them. Type refers to the omic level: transcript (t), protein (p), or metabolite (m).