Table 3. Identification of Carbon Fixation Cluster.
Gene identifiers and annotations of the carbon fixation (dicarboxylate/4-hydroxybutyrate cycle) cluster identified in the I. hospitalis culture STRING interaction map (Figure 2).
| I. hospitalis Culture | ||
|---|---|---|
| Gene Identifier | Annotation | Type |
| Igni_0944 | N2-acetyl-L-lysine aminotransferase | t |
| N2-Acetyl-L-Lysine | m | |
| Igni_0945 | Hypothetical protein | t |
| Igni_0445 | Succinate dehydrogenase iron-sulfur subunit | m |
| Igni_0085 | Succinyl-CoA synthetase (ADP-forming) alpha subunit | t |
| Igni_0086 | Succinyl-CoA synthetase (ADP-forming) beta subunit | t |
| Succinate | m | |
| Igni_0315 | Acetylornithine deacetylase | p |
| L-Ornithine | m | |
| Igni_0363 | Hypothetical protein | t |
| Igni_1361 | Glucokinase | p |
| Igni_0415 | Glucose-6-phosphate isomerase | t |
| Igni_0678 | Fumarase | |
| Fumarate | m | |
| Igni_1079 | Deoxyribose-phosphate aldolase | t,p |
| Igni_0257 | Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase-like protein | t |
| Igni_0256 | AMP-dependent synthetase and ligase | t,p |
| Igni_0983 | Isopropylmalate/citramalate/homocitrate synthase | p |
| Igni_1256 | Pyruvate/ketoisovalerate oxidoreductase, gamma subunit | t |
| Igni_0728 | N-acetyl-gamma-glutamyl-phosphate reductase | t |
| Igni_1387 | Ornithine carbamoyltransferase | t |
| L-Ornithine | m | |
| L-Citrulline | m | |
| Igni_0171 | Glutamine–fructose-6-phosphate transaminase | t |
| Igni_1430 | Argininosuccinate lyase | t |
| Fumarate | m | |
| Igni_0635 | Argininosuccinate synthase | |
| L-Citrulline | m | |
Note: Gene/proteins are listed by Ignicoccus gene identifiers with corresponding annotations. Metabolites are listed below enzymes that utilize or produce them. Type refers to the omic level: transcript (t), protein (p), or metabolite (m).