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. 2017 Aug 10;18:596. doi: 10.1186/s12864-017-3962-5

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Circle plots of gene expression level, transposable element (TE) density and methylation level in the mC, mCG, mCHG and mCHH contexts of soybean (a) NJCMS5A and (b) NJCMS5B. TE indicated “TE density”; Gene indicated “gene expression level”; C, CG, CHH and CHG indicated “methylation level in mC, mCG, mCHG and mCHH, respectively”. Gene expression level was calculated by fragments per kilobase of exon model per million mapped fragments (RPKM). Data is plotted for 20 Mb windows in all soybean chromosomes (CHR01-CHR20). Gene expression level (from light colour to dark colour) indicates the level from 0 to 100%, and TE density (from dark colour to light colour) indicates the density from 0 to 100%