Table 1.
Differentially expressed non-coding RNAs between healthy donor platelets and TEPs
| Ensembl gene ID | HGNC symbol | Description | Chromosome | Band | Strand | Start position | End position | Coding gene size | logFC | logCPM | PValue | FDR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000251562 | MALAT1 | Metastasis-associated lung adenocarcinoma transcript 1 (non-protein coding) [Source: HGNC Symbol; Acc:29665] | 11 | q13.1 | 1 | 65265233 | 65273940 | 8708 | 1.9466091726 | 3.3594222629 | 2.22E−18 | 1.36E−16 |
| ENSG00000234741 | GAS5 | Growth arrest-specific 5 (non-protein coding) [Source: HGNC Symbol; Acc:16355] | 1 | q25.1 | −1 | 173833038 | 173838020 | 3631 | 1.2965700312 | 6.0667784925 | 6.46E−18 | 3.75E−16 |
| ENSG00000253394 | LINC00534 | Long intergenic non-protein coding RNA 534 [Source: HGNC Symbol; Acc:43643] | 8 | q21.3 | 1 | 91233716 | 91581546 | 1354 | −1.2741948742 | 6.9347392686 | 6.66E−18 | 3.84E−16 |
| ENSG00000233093 | LINC00892 | Long intergenic non-protein coding RNA 892 [Source: HGNC Symbol; Acc:48578] | X | q26.3 | 1 | 135721702 | 135724588 | 1918 | −0.9799176457 | 5.6522502356 | 9.05E − 15 | 3.17E−13 |
| ENSG00000237803 | LINC00211 | Long intergenic non-protein coding RNA 211 [Source: HGNC Symbol; Acc:37459] | 2 | p22.2 | −1 | 38053390 | 38103417 | 2595 | −0.8369418324 | 6.0623819217 | 3.19E−14 | 1.02E−12 |
| ENSG00000224805 | LINC00853 | Long intergenic non-protein coding RNA 853 [Source: HGNC Symbol; Acc:43716] | 1 | p33 | 1 | 47644922 | 47646011 | 661 | −0.8077160792 | 5.7337580102 | 1.59E−13 | 4.57E−12 |
| ENSG00000269893 | SNHG8 | Small nucleolar RNA host gene 8 (non-protein coding) [Source: HGNC Symbol; Acc:33098] | 4 | q26 | 1 | 119199864 | 119200978 | 923 | 1.3323081879 | 3.4509009322 | 9.35E−12 | 2.03E−10 |
| ENSG00000222041 | LINC00152 | Long intergenic non-protein coding RNA 152 [Source: HGNC Symbol; Acc:28717] | 2 | p11.2 | 1 | 87754887 | 87906324 | 3125 | −0.7360299076 | 7.5625603844 | 2.60E − 11 | 5.10E−10 |
| ENSG00000203875 | SNHG5 | Small nucleolar RNA host gene 5 (non-protein coding) [Source: HGNC Symbol; Acc:21026] | 6 | q14.3 | −1 | 86370710 | 86388451 | 2206 | 1.1865024192 | 6.4001568217 | 5.55E−11 | 1.03E−09 |
| ENSG00000174365 | SNHG11 | Small nucleolar RNA host gene 11 (non-protein coding) [Source: HGNC Symbol; Acc:25046] | 20 | q11.23 | 1 | 37075221 | 37079564 | 2813 | −1.2708676941 | 4.2727590978 | 9.28E−11 | 1.65E−09 |
| ENSG00000176124 | DLEU1 | Deleted in lymphocytic leukemia 1 (non-protein coding) [Source: HGNC Symbol; Acc:13747] | 13 | q14.2 | 1 | 50656307 | 51297372 | 9926 | −0.8000576828 | 4.3696475017 | 8.62E − 10 | 1.29E−08 |
| ENSG00000253819 | LINC01151 | Long intergenic non-protein coding RNA 1151 [Source: HGNC Symbol; Acc:49471] | 8 | q24.13 | −1 | 123682624 | 123706345 | 571 | −0.7125873249 | 5.4683635079 | 4.38E−09 | 5.72E−08 |
| ENSG00000172965 | MIR4435–1HG | mIR4435-1 host gene (non-protein coding) [Source: HGNC Symbol; Acc:35163] | 2 | q13 | −1 | 111953927 | 112252677 | 8500 | −0.5543385259 | 8.5284464047 | 2.25E−08 | 2.55E−07 |
| ENSG00000232065 | LINC01063 | Long intergenic non-protein coding RNA 1063 [Source: HGNC Symbol; Acc:49092] | 3 | q29 | −1 | 196358369 | 196359458 | 348 | −0.8960016404 | 3.6110058313 | 3.23E−08 | 3.55E−07 |
| ENSG00000215483 | LINC00598 | Long intergenic non-protein coding RNA 598 [Source: HGNC Symbol; Acc:42770] | 13 | q14.11 | −1 | 41025131 | 41055143 | 1037 | −0.8601585239 | 3.7626854672 | 1.02E−06 | 8.05E−06 |
| ENSG00000237854 | LINC00674 | Long intergenic non-protein coding RNA 674 [Source: HGNC Symbol; Acc:44355] | 17 | q24.2 | 1 | 66098049 | 66111659 | 734 | −0.7884907133 | 5.1088601129 | 2.63E−06 | 1.89E−05 |
| ENSG00000250334 | LINC00989 | Long intergenic non-protein coding RNA 989 [Source: HGNC Symbol; Acc:48918] | 4 | q21.21 | 1 | 80413570 | 80497614 | 2231 | −0.4460106539 | 9.2584443266 | 5.38E−06 | 3.62E−05 |
| ENSG00000214194 | LINC00998 | Long intergenic non-protein coding RNA 998 [Source: HGNC Symbol; Acc:48953] | 7 | q31.1 | −1 | 112756773 | 112758668 | 1896 | −0.5153540079 | 4.2695677376 | 7.12E−05 | 3.57E−04 |
| ENSG00000272168 | CASC15 | Cancer susceptibility candidate 15 (non-protein coding) [Source: HGNC Symbol; Acc:28245] | 6 | p22.3 | 1 | 21665003 | 22214734 | 11,161 | −0.5758874127 | 5.1721135489 | 1.63E-04 | 7.36E−04 |
| ENSG00000231607 | DLEU2 | Deleted in lymphocytic leukemia 2 (non-protein coding) [Source: HGNC Symbol; Acc:13748] | 13 | q14.2 | −1 | 50601269 | 50699856 | 2728 | −0.4586998033 | 6.4034037922 | 1.02E-04 | 4.91E−04 |