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. 2017 Aug 15;7:8145. doi: 10.1038/s41598-017-08414-y

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Ranks of cognate complexes among local refine antibody–antigen models. Interface scores (Isc) of the top-scoring cognate (turquoise) and non-cognate (grey) local refine models for (a) bound, (b) unbound, and (c) homology antibody–antigen complexes. Each row indicates a single antigen represented by the PDB ID of the bound complex. Antigens are sorted based on decreasing experimental binding affinities for their native antibodies (top to bottom). The top left corner shows the number of antigens where the cognate antibody complex is ranked in the top 1, 3, and 5 top-scoring cognate and non-cognate models generated for the antigen.