SUMMARY
The Salvador-Warts-Hippo (Hippo) pathway is a conserved regulator of organ size and is deregulated in human cancers [1]. In epithelial tissues, the Hippo pathway is regulated by fundamental cell biological properties, such as polarity and adhesion, and coordinates these with tissue growth [2–4]. Despite its importance in disease, development and regeneration, the complete set of proteins that regulate Hippo signalling remain undefined. To address this, we used proteomics to identify proteins that bind to the Hippo (Hpo) kinase. Prominent among these were PAK-interacting exchange factor (known as Pix or RtGEF) and G-protein-coupled receptor kinase interacting protein (Git). Pix is a conserved Rho-type guanine nucleotide exchange factor (Rho-GEF) homologous to Beta-PIX and Alpha-PIX in mammals. Git is the single D. melanogaster homologue of the mammalian GIT1 and GIT2 proteins, which were originally identified in the search for molecules that interact with G-Protein-coupled receptor kinases [5]. Pix and Git form an oligomeric scaffold to facilitate sterile 20-like kinase activation and have also been linked to GTPase regulation [5–8]. We show that Pix and Git regulate Hippo pathway-dependent tissue growth in Drosophila melanogaster, and that they do this in parallel to the known upstream regulator Fat cadherin. Pix and Git influence activity of the Hpo kinase by acting as a scaffold complex, rather than enzymes, and promote Hpo dimerization and autophosphorylation of Hpo’s activation loop. Therefore, we provide important new insights into an ancient signalling network that controls the growth of metazoan tissues.
Graphical Abstract
RESULTS and DISCUSSION
Pix and Git physically and genetically interact with Hippo
Hpo is recognised as the most upstream kinase in the Hippo pathway core kinase cassette [9–12]. Multiple proteins regulate its activity including Tao-1 [13, 14], RASSF [15] and the STRIPAK phosphatase complex [16]. To identify additional regulators of Hpo, we used affinity purification of Hpo tagged at both the N- and C-termini in D. melanogaster S2 cells, followed by mass spectrometry [17]. We recovered several known Hippo pathway proteins including Rassf, Salvador and Yki. Among the most abundant Hpo-interacting proteins were Pix and Git; Pix was identified with 5 peptides and a SAINT probability of 0.999, whilst Git was represented with 15 peptides and a maximal SAINT probability of 1 (Table S1) [18]. Furthermore, in an independent study, both Pix and Git were recovered as Hpo-binding proteins [16]. To confirm these results, we performed co-immunoprecipitation experiments in S2 cells and found that Hpo formed a physical complex with both Pix and Git (Figures 1A and S1). We also performed co-immunoprecipitation experiments in D. melanogaster wing imaginal discs and demonstrated that Pix and Git physically interact in this tissue (Figure 1B).
Pix regulates Hippo pathway activity
To investigate a role for Pix in mediating control of organ size by the Hippo pathway, we performed a number of experiments. Initially, we depleted Pix using RNA interference (RNAi) in a sensitised Hippo pathway background (GMR>Yki) that we have used previously to identify novel Hippo pathway proteins [13, 19]. The GMR>Yki strain has eye specific Yki overexpression, which results in subtle eye overgrowth and an increase in interommatidial cells [13]. Pix depletion caused a striking increase in interommatidial cells in Yki-overexpressing eyes when assessed at 44 hours after puparium formation (APF) (Figures 1C and 1D). We also found in larval wing imaginal discs that Pix depletion caused an increase in both ex-lacZ and ban-lacZ, well-established reporters of Yki activity [20–22] (Figures 1E, 1E′, S1E and S1E′). The observed increase in ex-lacZ was dependent on Yki, as co-depletion of Pix and Yki suppressed this increase (Figures S1D and S1D′). Moreover, Pix depletion in GMR>Yki eyes gave rise to an increase in adult eye size, with folding and convolution of the eye, consistent with enhanced Yki activity (Figures 1F–1G′). Indeed, RNAi-mediated depletion of the key Yki transcription factor, Scalloped (Sd), completely suppressed the ability of Yki overexpression and Pix-RNAi to enhance eye size (Figures 1H and 1H′). Collectively, these in vivo data provide evidence that Pix regulates Hippo pathway dependent tissue growth.
Pix and Git limit tissue growth in parallel Fat cadherin
To assess the role of Pix and Git in tissue growth further, we assessed animals that were mutant for the genes encoding these proteins. Both pix and git mutant animals were semi-viable; adults that emerged displayed a crumpled wing phenotype, which precluded measurement of size (data not shown). No obvious overgrowth was observed in other adult tissues, such as the eye. A common theme with upstream regulators of the Hippo pathway is that they operate in a redundant fashion [23]. Double mutant analysis has revealed that several upstream Hippo pathway proteins can compensate for each other. For example the loss of either merlin (mer), fat, ex or kibra alone gives subtle overgrowth phenotypes whereas tissues that are double mutant for these sets of genes show very strong overgrowth [20, 24–27]. Therefore, we reasoned that Pix and Git’s ability to regulate Hippo pathway dependent tissue growth might be masked by functional redundancy. To test this idea, we made a series of double or triple mutant animals with either fat or ex (pix, fat; pix, fat, ex; and fat, git), as Fat and Ex are well-defined upstream Hippo pathway proteins [20, 28–31] and are thought to operate, at least in part, in separate branches of the Hippo pathway [23].
Initially we used the eyeless-FLP system to create clones of tissue lacking pix, fat, or both genes, in the eye and head capsule. Adult heads containing pix mutant clones displayed no obvious overgrowth whereas loss of fat showed slightly larger eyes and overgrowth in the head capsule, compared to controls (Figures 2A–2C). Compound mutation of both fat and pix, or fat and git genes caused substantial overgrowth, particularly in the ptilinum, compared to loss of each gene in isolation (Figures 2D and S2). These phenotypes were reminiscent of eye and head tissue that also lack both fat and ex, compared to tissue lacking only one of these genes (Figures 2C, 2E and 2F). Interestingly, tissue mutant for fat, pix and ex showed further overgrowth (Figure 2G). The enhanced tissue overgrowth in fat, pix and fat, ex, pix mutants was also manifest in reduced adult survival. Animals with fat, pix double mutant head tissue were less viable than animals with fat mutant head tissue alone, and animals with fat, ex, pix head tissue were 100% lethal (Figure 2H).
Animals that were homozygous mutant for both fat and pix, or fat and git survived to early pupal stages of development, allowing assessment of organ size in larvae. We observed a striking increase in the size of imaginal tissues from fat, git compared to fat alone, which was especially obvious in leg discs at day 11 (Figures 2J–2L). We performed similar analyses on fat and pix single and double mutant wing discs, dissected from tightly developmentallystaged animals. Z -sections of non-flattened tissues were captured by confocal microscopy and the volume of each disc quantified (Figures 2M–2S). At day 6 pix mutant wing imaginal discs displayed no obvious increase in volume compared to wildtype wing discs. At day 9fat, pix discs were significantly larger than fat discs (Figure 2S). Because control, pix and git animals pupate at day 6 we were unable to quantify these tissues at day s9 or 11. In this experiment fat animal s pupated before day 11, fat, pix mutant animals did not, and contained even larger wing discs (Figure 2S). Together, these data support the idea that both Pix and Gitrestrict tissue growth, and do so in parallel to the Fat branch of the Hippo pathway.
Pix and Git control cell number through Hippo
Pix and Git are known to function together as a scaffold complex to activate the sterile 20-like kinase PAK [32], which is structurally related to Hpo. Given that we identified Pix and Git as Hpo-binding proteins, we investigated the possibility that these three proteins operate together to regulate tissue growth by analysing genetic interactions with hpo. We performed these experiments in pupal eyes, which offer an excellent setting to quantify increases in cell number when tissue growth is deregulated. We used the eyeless-FLP system to generate eyes with clones of tissue containing a hypomorphic allele of hpo (hpoMGH1). As reported previously, hpoMGH1 mutant eyes displayed an increase in the number of interommatidial cells compared to wildtype eyes (Figures 3A, 3B and 3H) [9]. We found that combining the hpoMGH1 allele with mutations in either git or pix further increased interommatidial cell number (Figures 3C, 3D and 3H). To test whether Pix and Git act separately or together to regulate the Hippo pathway, we analysed eye tissue that was triple mutant for pix, git and hpo. Triple mutant tissue showed no further increase in interommatidial cell number than either double mutant, suggesting that Pix and Git actin partnership to regulate the Hippo pathway (Figures 3E and 3H).
To test whether Pix and Git regulate interommatidial cell number through Hpo or in parallel, we also examined their ability to affect cell number in tissue harbouring a null allele of hpo (hpo5.1), which lacks almost the entire Hpo coding sequence [33]. In the background of hpo nullizygous tissue, loss of pix and git no longer affected interommatidial cell number, suggesting that Pix and Git regulate cell number and eye growth by acting through Hpo (Figures 3F–3H).
Pix and Git function as a bipartite scaffold to promote Hippo dimerization and activity
Pix and Git perform many of their signal transduction functions by acting as a heterodimeric scaffold [34–37]. To test whether Pix and Git serve as a scaffold to activate Hpo, we used a series of genetic and biochemical experiments. Hippo pathway hyperactivation retards the growth of tissues such as the eye and wing [9–12, 38]. To determine whether Pix and Git could enhance Hpo’s ability to retard tissue growth, we used D. melanogaster strains harbouring pix and git transgenes. Pix and Git overexpression did not obviously affect wing or eye size when expressed using the nub-gal4 and GMR-Gal4 drivers, respectively, compared to controls (Figures 3H, 3I and 3M–3O). However, when we doubled the dosage of both pix and git transgenes, we observed a significant reduction in wing size, consistent with a role for Pix and Git in suppression of organ growth (Figure S3). Overexpression of a weak hpo transgene [39] reduced wing size to 60% of control wings, but had no obvious effect on eye size or roughness (Figures 3J, 3M and 3P). Individually expressing either Pix or Git with Hpo did not enhance Hpo’s ability to repress wing size (Figure 3M). However, when Pix, Git and Hpo were expressed together, a striking decrease in wing size was observed to only 15% the size of wildtype wings (Figures 3K and 3M). Consistently, co-expression of Pix, Git and Hpo in the eye substantially reduced eye size and increased roughness, compared to Hpo overexpression alone (Figure 3Q). In both eyes and wings, the observed enhancement of Hpo-driven inhibition of tissue growth by Pix and Git was greater than simply doubling the dose of the hpo transgene (Figures 3L, 3M and 3R). The observed requirement for both Pix and Git to be overexpressed simultaneously in order to enhance Hpo-driven growth retardation is consistent with the idea that Pix and Git function together in a complex to activate Hpo. The observation that Pix and Git overexpression minimally influence organ size, but enhance Hpo’s ability to limit organ size is reminiscent of experiments with Sav, which serves as a scaffold for Hpo and Wts; GMR-Gal4 dependent sav expression has no phenotype, but it enhances the ability of both Hpo and Wts to limit eye size [12, 38].
Hpo, and its mammalian orthologues, are known to dimerize and this is essential for kinase activation [39–41]. Based on our findings above, we predicted that Pix and Git would promote Hpo dimerization. To test this, we employed transgenic D. melanogaster strains expressing split Venus tagged-Hpo kinase-dead proteins HpoVC and HpoVN (wild-type Hpo was unsuitable as it caused substantial reduction of wing imaginal disc tissue when driven with nub-Gal4). In this system, Venus fluorescence is only detectable when Hpo dimerizes, and in doing so brings the N- and C-terminal halves of Venus together [39]. In control wing imaginal discs expressing HpoVC and HpoVN alone, as well as discs additionally expressing either Pix or Git, we observed very low Venus fluorescence (Figures 4A and 4C). When Pix and Git were expressed together, we observed a more than 3-fold increase in Venus fluorescence, indicative of strong induction of Hpo dimerization (Figures 4B and 4C). This effect was specific to Hpo dimerization, as Pix and Git overexpression failed to influence dimerization of the control proteins Fos and Jun (Figures 4C). Pix and Git overexpression also induced strong association of Hpo with Sav (Figure 4C), suggesting that Pix and Git influence Hpo’s ability to engage with and activate the Hippo pathway core kinase cassette, which is consistent with our findings that Pix and Git influence Yki activity and enhance Hpo’s ability to retard organ growth.
To test biochemically whether Pix and Git activate Hpo, we assessed their ability to regulate phosphorylation of the Hpo activation loop (threonine 195), a well-characterized marker of activity of Hpo and its mammalian orthologues MST1 and MST2 [42, 43]. Overexpression of either Pix or Git alone in D. melanogaster S2 cells had no significant impact on Hpo activity, whereas Pix and Git co-overexpression resulted in an approximate doubling of Hpo T195 phosphorylation compared to Hpo alone (Figures 4D and S4F).
Pix and Git act as a scaffold, rather than enzymes, to activate Hippo
Given that Pix and Git promoted Hpo dimerization, we considered that they might activate Hpo by promoting Hpo transphosphorylation, a key mechanism of Hpo and MST1/2 activation in D. melanogaster and mammals, respectively [39, 41–43]. Alternatively, Pix and Git could modulate the activity of other kinases that are known to phosphorylate the activation loop of Hpo, such as Tao-1 [13, 14]. To distinguish between these two scenarios, we expressed either wildtype or kinase dead (KD, carrying a mutation in the ATP-binding site – K71R) versions of Hpo in the presence and absence of both Pix and Git, and assessed Hpo-T195 phosphorylation. Pix and Git only enhanced Hpo activation loop phosphorylation when coexpressed with active Hpo, suggesting that Pix and Git potentiate Hpo transphosphorylation rather than phosphorylation by additional regulatory proteins (Figure 4E).
Next, we more formally addressed whether Pix and Git act as scaffolds to activate Hpo as these proteins have been reported to function as both enzymes and scaffolds. For example, Pix enzymatic activity is required to activate the Rho-GTPases Rac1 and Cdc42, whereas Git enzymatic activity is required to deactivate ARF family GTPases. To discern between these possibilities, we generated mutant versions of Pix and Git that are known to abolish their enzymatic activity; Pix serine 89 was mutated to glutamic acid (S89E) [44], and Git arginine 39 was mutated to lysine (R39K) [32]. We then coexpressed wildtype or enzymatic dead (denoted by *) Pix and Git in the indicated combinations with Hpo (Figure 4F). In each scenario, Pix and Git overexpression were still able to robustly promote Hpo activation, as assessed by Hpo-T195 phosphorylation (Figure 4F). Given that in mammalian cultured cells, Pix and Git activate PAK [32], and PAK was recently linked to Hippo signalling [45], we considered the possibility that Pix and Git activate Hpo via the Drosophila homologues of PAK (Pak1 and Pak3), but found no evidence for this (Figure S4). Together, this indicates that Pix and Git activate Hpo by acting as scaffolds rather than enzymes, an assertion that is further supported by our gain of function data in cultured cells and in vivo, where overexpression of both Pix and Git were required to activate Hpo and enhance its ability to retard tissue growth. Pix and Git might enhance local concentrations of Hpo within cells to enable Hpo activation and/or facilitate structural changes that promote transphosphorylation between Hpo dimers. Such studies will be most informative in tissues that the Hippo pathway is known to control the growth of, such as imaginal discs.
CONCLUDING REMARKS
Most founding members of the Hippo pathway were identified in clonal homozygous screens. The present study highlights the importance of more recent biochemical and RNA interference approaches that have identified Hippo pathway genes that were not recovered using other methods. Further, this study underscores the high level of redundancy inherent in upstream regulators of the Hippo pathway, as growth regulatory roles for Pix and Git were only revealed when they were disabled in the context of mutations in the Fat upstream branch of the Hippo pathway. The Hippo pathway is known to regulate the growth of many tissues in addition to imaginal discs, and upstream regulators of the Hippo pathway show varying degrees of redundancy in these tissues [2, 4, 23]. Therefore, it is conceivable that Pix and Git regulate Hippo pathway activity in a non-redundant fashion in non-imaginal disc tissues. Currently it is unclear what controls Pix and Git in their ability to regulate Hpo. One possibility is that Pix and Git provide a link between the apicobasal polarity protein Scribble and the Hippo pathway. Scribble has been linked to Pix and Git in mammalian cells [35], and has been shown to affect Hippo pathway activity in both D. melanogaster and in mammalian cells [2, 4, 23]. A further intriguing possibility is that Pix and Git provide a connection between integrins, focal adhesions and Hippo signalling. Pix and Git are known to regulate focal adhesion turnover, and they localise at focal adhesions through Git’s ability to bind to Paxillin. Pix and Git are also well known mediators of mechanical information [46]. Therefore, in the context of tissue growth control, Pix and Git could conceivably provide a biochemical link between mechanical information from integrins and/or focal adhesions to the Hippo pathway core kinase cassette.
EXPERIMENTAL PROCEDURES
D. melanogaster stocks
Transgenic D. melanogaster stocks were generated that harbored the N-terminally tagged UAS-HA-Pix and UAS-MYC-Git coding sequences on the third chromosome. Other stocks were UAS-LacZ, UAS-GFP, GMR-Gal4, en-Gal4, nub-Gal4, y w eyFlp; FRT42D P[W+ ubi-GFP], UAS-Pix-1 RNAi (BSC#32974), ban-lacZ, and ex697(all Bloomington Drosophila Stock Center), pix (dpix1036) [47], git (dgitex21c) [48], hpoMGH1, hpo5.1, ft422, ftfd, exMGH1, exe1, UAS-Dicer, UAS-Pix RNAi (KK 105093), UAS-Yki RNAi (KK 104523), UAS-LacZ RNAi (GD 51446), UAS-Sd RNAi (KK 108877) UAS-Pak1 RNAi (KK 108937) and UAS-Pak3 RNAi (GD 39844) (all Vienna Drosophila RNAi Center). All D. melanogaster expressing transgenic constructs were reared at 25°C, with the exception of animals in Figures 3N–3R, which were raised at 18°C.
Immunofluorescence
Primary antibodies were specific for β-galactosidase (Sigma), Discs Large and Cubitus interruptus (both Developmental Studies Hybridoma Bank). Anti-mouse secondary antibodies were from Invitrogen. Tissues were stained as in [21]. DAPI was used to visualise nuclei in third instar wing and leg imaginal discs.
Quantification of organ size
Wings were dissected from adult female flies reared at 25°C, and mounted in Canada Balsam (Sigma). Wing sizes were quantified using Adobe Photoshop as in [21]. The mean and S.E.M. values of wing area were determined with GraphPad Prism. Flies laid eggs for four hours and wing imaginaldiscs were dissected from developmentally staged animals and stained with DAPI. Z-sections of non-flattened tissues were captured using a confocal microscope and Imaris software was used to quantify the volume of each disc. For statistical analysis, genotypes were compared using an analysis of variance (ANOVA)test, followed by a post hoc Tukey’s test to determine which genotypes were different from one another. When comparing only two genotypes, a Student’st test was used. p values <0.05 were considered significant.
Quantification of relative survival
FRT males that were heterozygous for a mutation of interest were mated to eyeless-FLP females. This mating is expected to produce F1 progeny that contain either wildtype or mutant clones at a one to one ratio. The ratio of wildtype and mutant F1 progeny were recorded for each genotype and compared. For statistical analysis, genotypes were compared using unpaired Student’s t tests. p values <0.05 were considered significant.
Expression plasmids
A complete Hpo open reading frame was cloned into pMK33-NTAP-GS or pMK33-CTAP-SG vectors [17], to generate N-or C -terminally tagged Hpo, respectively. D. melanogaster pix and git coding sequences in the pXJ40 plasmid were gift sfrom Dr E. Manser. To constitutively express these genes in cell culture, wesub -cloned N-terminally tagged HA-pix, and V5-gitsequences into the pAc5.1 vector. To generate transgenicD. melanogaster, N-terminally tagged HA-Pix and MYC -Git coding sequences were cloned into the pUAST vector. In order to express Pix protein without GEFenzymatic activity, we performed site directed mutagenesis to change serine 89 to glutamic acid (S89E) [44]. To express Git protein without GAP enzymatic activity, site directed mutagenesis was used to changearginine39 to lysine (R39K) [32]. pAc5.1-Hpo, pAc5.1-Hpo K71R and pAc5.1-RASSF were from N. Tapon [11, 15].
Affinity purification and mass-spectrometry
pMK33-TAP-GS Hpo plasmid constructs were used to establish stable S2 cell lines using hygromycin selection. Cells were induced with CuSO4 and protein extracts were prepared as in [17]. Extracts were incubated with streptavidin beads (Pierce), washed with lysis buffer, and proteins were eluted with 2 mM biotin in lysis buffer, precipitated with TCA, and separated on a short SDS-PAGE. Gel slices were submitted for mass spectrometry analysis and protein identification, which was performed at the Taplin Mass Spectrometry Facility at Harvard Medical School. Lists of identified proteins were statistically analyzed against six independent control samples from untransfected S2 cells using the SAINT program [18].
Immunoblotting
S2 cells were transfected with the indicated plasmids and lysed after 48 hours, whereas third instar larval imaginal discs were dissected and lysed directly. Lysates were immunoprecipitated, or directly subjected to SDS-PAGE and transferred to PVDF (Millipore). Membranes were immunoblotted with antibodies specific for HA tag (Invitrogen), Flag tag (Sigma), V5 tag (Invitrogen), GFP (Roche), phospho-T195-Hpo (Cell Signaling) or Tubulin (Sigma).
Supplementary Material
Acknowledgments
We thank S. Bahri, B. Baum, A.P. Haghighi, Z-C Lai, E. Manser, N. Tapon, the Developmental Studies Hybridoma Bank, the Vienna Drosophila RNAi Center, the Australian Drosophila Research Support Facility (www.ozdros.com), and the Bloomington Drosophila Stock Centre for fly stocks, plasmids and antibodies. We thank Liu Yang for generating SAINT scores. K.F.H is a Sylvia and Charles Viertel Senior Medical Research Fellow. This research was supported by a Project Grant from the National Health and Medical Research Council of Australia, and by NIH grant GM097727 and NSF grant 0640700 to A.V. Mass spectrometry was performed at the Taplin Mass Spectrometry Facility, Harvard Medical School.
Footnotes
AUTHOR CONTRIBUTIONS
L.G.D, C.L.C.P, X.Z., J.L.D, M.T., A.V. and K.F.H. performed experiments and analysed data. L.G.D and K.F.H conceived the study and wrote the manuscript.
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