Table 1. Genomic studies of DCIS breast cancers.
This table contains a list of genomic studies from next-generation sequencing, microarray CGH profiling and SNP array profiling of DCIS breast cancers. The columns are: primary method used in the paper, first author, year of publication, number of samples analysed, type of tissue, reference number and PubMed ID (PMID). The number of samples in each study are reported as DCIS-only, DCIS-IDC (synchronous samples) and IDC-only samples.
| Method | First Author | Year | Samples Analysed
|
Ref | PMID | |||
|---|---|---|---|---|---|---|---|---|
| DCIS | DCIS-IDC | IDC | Type | |||||
| NGS | Kim | 2015 | 6 | 5 | 0 | Frozen | [27] | 25831047 |
| Kroigard | 2015 | 0 | 1 | 0 | Frozen | [28] | 25730902 | |
| Yates | 2015 | 0 | 1 | 50 | FFPE | [31] | 26099045 | |
| Foschini | 2013 | 3 | 12 | 0 | FFPE | [20] | 23337025 | |
| Newburger | 2013 | 6 | 0 | 6 | FFPE | [30] | 23568837 | |
|
| ||||||||
| aCGH | Oikawa | 2015 | 1 | 0 | 5 | FFPE | [92] | 24402639 |
| Hernandez | 2012 | 0 | 13 | 0 | Frozen | [26] | 22252965 | |
| Liao | 2012 | 20 | 25 | 24 | FFPE | [93] | 22887771 | |
| Hwang | 2011 | 52 | 0 | 0 | FFPE | [94] | 21496874 | |
| Johnson | 2011 | 0 | 21 | 0 | FFPE | [42] | 22052326 | |
| Muggerud | 2010 | 31 | 42 | 36 | Frozen | [95] | 20663721 | |
| Iakovlev | 2008 | 6 | 15 | 0 | FFPE | [96] | 18628458 | |
| Yao | 2006 | 10 | 0 | 18 | Frozen | [97] | 16618726 | |
|
| ||||||||
| SNP-Arrays | Gorringe | 2015 | 31 | 18 | 0 | FFPE | [102] | 26321097 |
| Johnson | 2012 | 0 | 21 | 0 | FFPE | [42] | 22052326 | |