Table 1.
Nucleotide and amino acid identities between the two Yunnan E-18 strains, Metcalf and other E-18 in all sequenced genomic regions.
| Nucleotide identity (%) [Amino acid identity (%)] | ||||
|---|---|---|---|---|
| Region | A83/YN/CHN/2016 | A86/YN/CHN/2016 | ||
| Metcalf | Other E-18 | Metcalf | Other E-18 | |
| 5′UTR | 81.7 | 85.1–97.7 | 81.7 | 84.8–97.0 |
| VP4 | 80.7(92.8) | 85.0–96.6 (95.7–98.6) | 78.7(89.9) | 83.6–94.7(95.7–100) |
| VP2 | 80.5(96.5) | 86.0–98.3 (98.5–100) | 80.5(96.5) | 86.0–98.3(98.5–100) |
| VP3 | 79.6(96.2) | 87.2–97.6 (96.7–97.9) | 79.9(97.1) | 87.4–97.8(97.5–98.7) |
| VP1 | 79.0(92.0) | 86.9–97.2 (94.8–97.9) | 79.2(92.7) | 87.5–97.7(95.8–99.3) |
| 2A | 77.8(93.3) | 78.4–90.7 (90.7–96.0) | 77.8(93.3) | 78.7–90.7(90.7–96.0) |
| 2B | 79.1(97.0) | 75.1–90.9 (90.9–100) | 79.1(97.0) | 75.1–90.9(90.9–100) |
| 2C | 82.4(97.0) | 79.4–91.5 (94.8–97.3) | 82.3(96.7) | 79.3–91.4(94.5–97.0) |
| 3A | 77.2(92.1) | 75.7–81.3 (93.3–100) | 77.2(92.1) | 75.7–81.3(93.3–95.5) |
| 3B | 78.7(95.5) | 74.2–81.8 (95.5–100) | 78.8(95.5) | 77.3–81.8(95.5–100) |
| 3C | 82.3(97.3) | 76.3–81.1 (95.6–97.3) | 82.3(97.3) | 76.3–81.1(95.6–97.3) |
| 3D | 80.2(96.6) | 77.5–80.9 (94.3–95.7) | 80.2(96.1) | 77.5–80.9(94.3–95.7) |
| 3′UTR | 85.9 | 81.0–84.2 | 85.1 | 80.0–85.1 |
| Genome | 80.4(95.4) | 81.8–88.5 (95.8–97.2) | 80.4(95.5) | 81.8–88.5(95.9–97.3) |