Table 1.
The protein models for Trp, WW and GB3.
Protein | PDB ID | Number of residues | Number of beads | Number of bonds/virtual bonds | Radius of gyration (nm)a |
---|---|---|---|---|---|
Trp | 1L2Y | 20 | 33 | 98 | 0.75 |
WW | 2M8I | 43 | 79 | 262 | 1.08 |
GB3 | 1PTF | 87 | 164 | 572 | 1.15 |
The radius of gyration was calculated using the PDB utility servers provided by the Bax group at NIH [30].