Table 1.
Summary of incorrectly annotated genes
| IDa | Gene | Chromosomal/plasmid position | Detected length (aa) | Annotated length (aa) |
|---|---|---|---|---|
| Erroneously annotated CDS on Xe chromosome | ||||
| 0056329 | XCV0252 | 292545..293186 | 214 | 103 |
| 0056337 | dcp2 | 295098..297215 | 706 | 697 |
| 0162384 | XCV0352 | 403872..404171 c | 100 | 98 |
| 0107340 | hrpD6 | 469724..470224 c | 167 | 85 |
| 0002631 | xopD | 486784..488823 | 757 | 545 |
| 0057941 | hsdS1 | 576612..577958 | 449 | 419 |
| 0003072 | trpC | 584455..585336 | 294 | 265 |
| 0106644 | XCV0529 | 595352..597223 c | 624 | 532 |
| 0030344 | XCV0537 | 602135..603208 | 358 | 308 |
| 0133900 | XCV0557 | 624664..625527 c | 281 | 247 |
| 0161114 | XCV0564 | 632247..633056 c | 270 | 144 |
| 0003611 | XCV0612 | 693670..694671 | 334 | 326 |
| 0105852 | pheC | 736187..737158 c | 324 | 266 |
| 0032290 | XCV0855 | 974414..975196 | 261 | 260 |
| 0059889 | XCV0861 | 983577..986486 | 968 | 660 |
| 0061379 | XCV1116 | 1247631..1248212 | 194 | 193 |
| 0034580 | raxB | 1401839..1404616 | 926 | 718 |
| 0156885 | XCV1265 | 1423680..1424456 c | 259 | 208 |
| 0007939 | XCV1378 | 1558348..1558917 | 190 | 162 |
| 0156077 | XCV1397 | 1577580..1578143 c | 188 | 185 |
| 0036069 | dapD | 1672904..1674070 | 389 | 285 |
| 0036594 | grpE | 1761374..1762582 | 403 | 172 |
| 0154666 | hutU | 1889784..1891697 c | 638 | 555 |
| 0099525 | XCV1716 | 1935113..1936231 c | 373 | 272 |
| 0010368 | XCV1807 | 2036752..2038401 | 550 | 497 |
| 0098447 | XCV1885 | 2132024..2133079 c | 352 | 188 |
| 0067505 | XCV2100 | 2394132..2395619 | 469 | 306 |
| 0125297 | flgG | 2310361..2311182 c | 274 | 261 |
| 0040728 | exbB2 | 2584091..2584648 | 186 | 183 |
| 0150414 | XCV2312 | 2645805..2646305 c | 167 | 150 |
| 0122465 | XCV2513 | 2837767..2838294 c | 176 | 89 |
| 0094634 | cydD | 2857544..2859259 c | 572 | 570 |
| 0094553 | argB | 2874455..2876008 c | 518 | 426 |
| 0122245 | dksA | 2884537..2885304 c | 256 | 147 |
| 0093090 | gumE | 3162956..3164299 c | 448 | 433 |
| 0120648 | infC | 3173992..3174486 c | 165 | 156 |
| 0091857 | XCV2971 | 3378614..3379942 c | 443 | 375 |
| 0073386 | cheB2 | 3442416..3444254 | 613 | 369 |
| 0019248 | XCV3212 | 3657508..3659298 | 597 | 518 |
| 0020234 | XCV3377 | 3862711..3863067 | 119 | 103 |
| 0075628 | XCV3419 | 3905421..3907445 | 675 | 557 |
| 0114862 | xpsM | 4216381..4217121 c | 247 | 217 |
| 0114852 | xpsK | 4218136..4219170 c | 345 | 301 |
| 0114582 | rmlD | 4282300..4283133 c | 278 | 273 |
| 0086369 | XCV3785 | 4369448..4371499 c | 684 | 616 |
| 0085725 | rpoD | 4490900..4492780 c | 627 | 625 |
| 0078964 | rho | 4539894..4541690 | 599 | 420 |
| 0053728 | guaA | 4966625..4967413 | 266 | 256 |
| 0053999 | XCV4380 | 5042765..5043472 | 236 | 222 |
| Erroneously annotated CDS on Xe plasmid | ||||
| 0166278 | XCVd0050 | 56630..57289 | 220 | 217 |
a Number of the corresponding six-frame-database entry
c chromosomal position on the minus strand
For detailed information see Additional file 3