Table 7. Effects of filtering to L SNPs on coancestry estimate means (and SDs $\times 100$).

Pedigree value	$L=79,069$	$L=72,012$	$L=56,979$	$L=44,061$
	All SNPs	MAF$\ge 0.01$	MAF$\ge 0.05$	MAF$\ge 0.10$
0	0.000 (0.50)	0.000 (1.00)	0.000 (1.99)	0.000 (2.43)
0.03125	0.031 (0.30)	0.026 (0.30)	0.010 (0.89)	0.003 (1.45)
0.06750	0.061 (0.34)	0.056 (0.35)	0.041 (1.13)	0.036 (1.79)
0.09375	0.092 (0.27)	0.087 (0.27)	0.069 (0.72)	0.061 (1.13)
0.12500	0.124 (0.41)	0.120 (0.46)	0.112 (1.90)	0.109 (2.69)
0.15625	0.156 (0.29)	0.151 (0.29)	0.133 (0.65)	0.122 (1.15)
0.18750	0.184 (0.26)	0.179 (0.27)	0.157 (1.07)	0.144 (1.64)
0.25000	0.249 (0.42)	0.245 (0.45)	0.241 (1.87)	0.239 (2.62)
0.31250	0.311 (0.20)	0.307 (0.20)	0.285 (0.77)	0.271 (1.23)