Table A.22.
Simulations for LUAD and SKCM. In each cell, mean (sd) based on 200 replicates.
| CC | IPW | BPCA | PCA-TSR | NWDA | ||
|---|---|---|---|---|---|---|
| LUAD: N(0, 1) | ||||||
| Main | TP20 | 9.7(1.5) | 9.7(1.5) | 11.7(1.5) | 11.7(1.5) | 12.6(0.6) |
| TP40 | 9.7(1.5) | 9.7(1.5) | 14.0(1.0) | 14.0(1.0) | 14.3(1.2) | |
| TP.EBIC | 9.3(1.2) | 9.3(1.2) | 10.7(1.2) | 10.7(1.2) | 10.7(1.2) | |
| FP.EBIC | 13.7(5.5) | 13.3(2.1) | 12.3(3.5) | 12.3(3.5) | 7.3(5.1) | |
| SSE.EBIC | 22.09(7.68) | 22.48(7.71) | 19.55(3.34) | 19.52(3.38) | 15.68(2.56) | |
| Interaction | TP20 | 0.2(0.5) | 0.3(0.6) | 3.1(1.2) | 3.1(1.2) | 4.0(1.7) |
| TP40 | 0.7(1.2) | 1.0(1.0) | 5.0(1.7) | 5.0(1.7) | 6.3(1.5) | |
| TP.EBIC | 0.1(0.6) | 0.1(0.6) | 0.4(0.1) | 1.0(0.5) | 3.7(1.5) | |
| FP.EBIC | 4.2(3.4) | 3.0(2.1) | 4.6(4.6) | 2.4(1.9) | 4.0(4.9) | |
| SSE.EBIC | 20.71(3.39) | 19.48(5.94) | 19.54(4.36) | 20.54(5.44) | 17.76(2.53) | |
|
| ||||||
| LUAD: N(0, 4) | ||||||
| Main | TP20 | 5.1(1.4) | 5.1(1.8) | 6.4(1.6) | 6.4(1.6) | 7.3(1.9) |
| TP40 | 5.4(1.5) | 5.6(1.6) | 6.5(1.6) | 6.7(1.6) | 7.9(2.1) | |
| TP.EBIC | 5.1(1.3) | 5.0(1.6) | 6.0(1.7) | 6.0(1.7) | 6.9(2.1) | |
| FP.EBIC | 14.6(5.9) | 13.2(6.7) | 15.2(6.5) | 14.9(6.2) | 13.6(6.5) | |
| SSE.EBIC | 26.88(9.82) | 25.25(11.97) | 20.23(9.01) | 24.08(9.12) | 19.51(9.88) | |
| Interaction | TP20 | 0.2(0.8) | 0.4(0.9) | 1.1(0.4) | 1.1(0.4) | 2.1(0.4) |
| TP40 | 0.4(0.9) | 0.6(1.0) | 2.9(1.2) | 2.6(1.2) | 3.1(1.3) | |
| TP.EBIC | 0.1(0.3) | 0.2(0.8) | 0.2(0.6) | 0.2(0.6) | 1.9(0.4) | |
| FP.EBIC | 1.1(4.3) | 1.5(5.6) | 2.1(5.9) | 2.1(5.9) | 1.1(2.4) | |
| SSE.EBIC | 19.62(0.96) | 19.56(0.92) | 19.40(0.99) | 19.40(0.98) | 19.11(0.97) | |
|
| ||||||
| SKCM: N(0, 1) | ||||||
| Main | TP20 | 4.4(1.1) | 4.5(0.9) | 7.5(1.4) | 7.3(1.7) | 7.9(1.5) |
| TP40 | 4.4(0.9) | 4.6(1.7) | 9.1(1.6) | 8.6(1.2) | 9.8(1.2) | |
| TP.EBIC | 4.5(0.9) | 4.3(0.7) | 7.3(1.5) | 7.3(1.3) | 8.1(1.1) | |
| FP.EBIC | 11.3(6.1) | 8.5(2.4) | 9.3(5.1) | 8.6(4.9) | 8.4(4.1) | |
| SSE.EBIC | 34.00(17.49) | 35.34(15.77) | 20.32(12.49) | 28.99(9.82) | 17.34(9.81) | |
| Interaction | TP20 | 1.8(1.7) | 1.4(1.5) | 3.5(0.8) | 3.8(1.5) | 3.9(0.9) |
| TP40 | 2.9(1.1) | 3.6(1.4) | 6.5(1.9) | 5.5(1.9) | 6.9(1.9) | |
| TP.EBIC | 1.0(1.2) | 0.6(0.7) | 2.9(1.2) | 2.6(1.2) | 3.1(0.9) | |
| FP.EBIC | 6.6(5.9) | 7.1(7.4) | 5.8(8.6) | 4.9(9.1) | 3.8(6.0) | |
| SSE.EBIC | 21.51(4.64) | 19.98(1.60) | 17.48(0.72) | 19.72(1.08) | 16.22(1.45) | |
|
| ||||||
| SKCM: N(0, 4) | ||||||
| Main | TP20 | 3.9(1.1) | 4.0(0.9) | 5.5(1.5) | 5.6(1.6) | 6.6(1.7) |
| TP40 | 4.9(1.2) | 4.6(1.1) | 6.4(1.8) | 6.4(1.7) | 7.5(1.2) | |
| TP.EBIC | 3.0(1.2) | 3.9(1.2) | 5.3(1.8) | 5.1(1.6) | 6.3(1.8) | |
| FP.EBIC | 13.0(7.4) | 9.3(3.4) | 9.4(6.9) | 10.6(6.2) | 9.1(4.3) | |
| SSE.EBIC | 39.12(14.18) | 23.59(16.72) | 23.11(9.80) | 22.70(10.18) | 18.52(11.25) | |
| Interaction | TP20 | 0.6(1.1) | 1.1(1.1) | 2.0(0.8) | 1.9(1.0) | 2.9(0.8) |
| TP40 | 1.8(1.2) | 1.9(1.6) | 3.6(1.4) | 3.6(0.9) | 4.1(1.4) | |
| TP.EBIC | 0.3(0.5) | 0.1(0.4) | 1.6(0.7) | 1.1(0.4) | 2.5(0.8) | |
| FP.EBIC | 4.5(6.5) | 4.0(5.6) | 8.9(9.9) | 4.0(5.7) | 6.4(9.4) | |
| SSE.EBIC | 20.30(1.83) | 20.34(1.68) | 20.42(2.23) | 19.74(1.08) | 18.24(1.90) | |