Table 5.

Identified SNVs, genotypes and allele frequency (px) within the CfPAG-L sequence

Type of SNV		Position	Segment	Homozygous						Heterozygous
				nt	n	px	nt	n	px	nt	n	px
1	Transition	109	Intron A	gg	4	0.27	aa	0	0	ga	11	0.73
2	Transversion	112	Intron A	tt	4	0.27	gg	0	0	tg	11	0.73
3	Transition	2634	Exon 3	gg	0	0	aa	0	0	ga	15	1.0
4	Transition	2655	Exon 3	cc	0	0	tt	0	0	ct	15	1.0
5	Transition	2668	Intron C	cc	0	0	tt	0	0	ct	15	1.0
6	Transition	2671	Intron C	gg	0	0	aa	0	0	ga	15	1.0
7	Transition	2676	Intron C	gg	0	0	aa	0	0	ga	15	1.0
8	Transition	2702	Intron C	gg	0	0	aa	0	0	ga	15	1.0
9	Transition	2721	Intron C	gg	0	0	aa	0	0	ga	15	1.0
10	Transition	2738	Intron C	gg	0	0	aa	0	0	ga	15	1.0
11	Transition	3803	Intron D	tt	0	0	cc	0	0	tc	15	1.0
12	Transition	3822	Intron D	gg	0	0	aa	0	0	ga	15	1.0
13	Transition	3890	Intron D	gg	0	0	aa	0	0	ga	15	1.0
14	Transition	3912	Intron D	gg	2	0.14	aa	0	0	ga	13	0.86
15	Transversion	3936	Intron D	gg	4	0.27	cc	0	0	gc	11	0.73
16	Transversion	4098	Intron D	gg	0	0	tt	1	0.07	gt	14	0.93
17	Transversion	4124	Intron D	aa	1	0.07	cc	1	0.07	ac	13	0.86
18	Transition	4131	Intron D	cc	0	0	tt	0	0	ct	15	1.0
19	Transition	4141	Intron D	cc	0	0	tt	0	0	ct	15	1.0
20	Transversion	4221	Exon 5	aa	0	0	cc	0	0	ac	15	1.0
21	Transversion	6101	Intron G	tt	0	0	gg	0	0	tg	15	1.0
22	Transition	6152	Intron G	cc	0	0	tt	0	0	ct	15	1.0
23	Transition	6948	Intron H	cc	0	0	tt	0	0	ct	15	1.0
24	Transition	6981	Intron H	aa	0	0	gg	0	0	ag	15	1.0
25	Transition	6993	Intron H	cc	12	0.8	tt	0	0	ct	3	0.2
26	Transversion	7138	Intron H	aa	0	0	tt	0	0	at	15	1.0
27	Transition	7140	Intron H	tt	0	0	cc	0	0	tc	15	1.0
28	Transition	7345	Intron H	cc	0	0	tt	0	0	ct	15	1.0
29	Transition	7406	Intron H	cc	0	0	tt	0	0	ct	15	1.0
30	Transition	7537	Exon 9	cc	0	0	tt	0	0	ct	15	1.0
31	Transition	7549	Exon 9	cc	0	0	tt	0	0	ct	15	1.0