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. 2017 Aug 17;83(17):e00494-17. doi: 10.1128/AEM.00494-17

TABLE 2.

Good's coverage and diversity indices at GON stationsa

Station IDb Good's coverage (avg ± SD) (%) ACE*c ACEd (avg ± SD) Chao1 (avg ± SD) Berger-Parker dominance index Shannon index (avg ± SD) Invsimpson (avg ± SD)
PO3 A 99.7 ± 0.02 399 354 ± 42 331 ± 27 0.24 3.25 ± 0.008 11.98 ± 0.11
VE3 A 99.7 ± 0.02 459 350 ± 39 347 ± 29 0.31 3.05 ± 0.010 7.97 ± 0.08
TG1 B 99.6 ± 0.02 542 455 ± 69 373 ± 36 0.14 3.23 ± 0.007 14.64 ± 0.10
PO1 B 99.6 ± 0.02 507 479 ± 68 392 ± 40 0.13 3.17 ± 0.007 14.43 ± 0.10
TG2 B 99.6 ± 0.02 551 461 ± 56 401 ± 31 0.13 3.23 ± 0.005 15.00 ± 0.08
TA1 B 99.8 ± 0.02 614 333 ± 54 277 ± 36 0.13 2.66 ± 0.008 9.15 ± 0.05
TA2 B 99.8 ± 0.02 730 340 ± 60 279 ± 33 0.14 2.78 ± 0.008 10.01 ± 0.06
SA5 B 99.5 ± 0.03 714 594 ± 74 482 ± 48 0.16 3.26 ± 0.008 15.12 ± 0.11
SA8 B 99.6 ± 0.03 523 520 ± 55 428 ± 37 0.13 3.36 ± 0.007 16.66 ± 0.11
SA7 C 99.6 ± 0.03 724 609 ± 80 438 ± 49 0.32 2.73 ± 0.008 7.29 ± 0.06
SA1 C 99.5 ± 0.03 753 727 ± 108 498 ± 62 0.25 2.85 ± 0.009 8.93 ± 0.07
SA2 C 99.3 ± 0.04 935 962 ± 111 688 ± 64 0.26 2.96 ± 0.009 8.97 ± 0.08
SA3 C 99.4 ± 0.02 782 788 ± 74 561 ± 42 0.21 3.18 ± 0.006 11.95 ± 0.07
SA4 C 99.5 ± 0.03 829 706 ± 74 542 ± 50 0.16 3.26 ± 0.007 13.85 ± 0.10
SA6 C 99.7 ± 0.02 378 343 ± 42 293 ± 25 0.19 3.00 ± 0.005 11.18 ± 0.06
MC 99.6 418 418 400 0.22 3.17 11.74
a

Standard deviation values were generated by mothur after multiple resampling of the OTU abundance values in order to normalize the data in order to have equal number of sequences in each library.

b

Different uppercase letters next to the station names indicate significant differences between groups of stations (as in Fig. 2a) as obtained using the ANOSIM R statistic (Fig. S2).

c

ACE*, richness estimation of the nonnormalized 16S rRNA gene libraries.

d

ACE, richness estimation of 16S rRNA gene libraries normalized to the library with the lowest number of sequences.