Table 2.
Performance comparision for Allele-specific Expression Prediction task (sorted by emVar auROC)
| Participant (Lab-Submission) |
LogSkew Spearman corr. | emVar auPRC | emVar auROC |
|---|---|---|---|
| 4 (EnsembleExpr) | 0.449760 | 0.452561 | 0.655261 |
| 5-1(deltaSVM) | 0.333893 | 0.409730 | 0.626850 |
| DeepSEA | Not Applicable | 0.389 | 0.589 |
| 5-2(deltaSVM) | 0.342004 | 0.369083 | 0.577220 |
| 7 | 0.007343 | 0.431639 | 0.562854 |
| 6-1 | 0.217845 | 0.345064 | 0.561953 |
| 6-2 | 0.190123 | 0.354726 | 0.561776 |
| 1-3 | NaN* | 0.311243 | 0.556499 |
| 1-1 | NaN* | 0.305258 | 0.550820 |
| 1-2 | 0.030243 | 0.295886 | 0.550048 |
| 2-3 | −0.015476 | 0.303051 | 0.545206 |
| 1-5 | 0.056143 | 0.284863 | 0.541216 |
| 1-4 | 0.079049 | 0.293321 | 0.530856 |
| 3 | 0.030049 | 0.284356 | 0.511181 |
| 1-6 | 0.105376 | 0.286584 | 0.510103 |
| 2-2 | −0.007377 | 0.249473 | 0.479746 |
| 2-1 | −0.024347 | 0.234723 | 0.477301 |
| 2-5 | −0.023092 | 0.233144 | 0.472651 |
| 2-6 | −0.023092 | 0.233144 | 0.472651 |
| 2-4 | −0.023092 | 0.233144 | 0.472651 |
*
every variant was assigned the same score, leading to incalculable Spearman correlations