Table 2.
List of 246 significant SNP-CpG pairs (chromosomal and CpG sites positions were based on GRCh37/hg19)
| Chromosome | Gene | CpG site | Position | Number of SNP candidates | Number of mQTLs |
|---|---|---|---|---|---|
| 1 | AVPR1B | cg09069072 | 15,482,754 | 13 | 5 |
| GFI1 | cg09662411 | 92,946,132 | 10 | 2 | |
| cg09935388 | 92,947,588 | 10 | 2 | ||
| cg10399789 | 92,945,668 | 9 | 6 | ||
| cg12876356 | 92,946,825 | 10 | 2 | ||
| cg18146737 | 92,946,701 | 10 | 2 | ||
| cg18316974 | 92,947,035 | 10 | 2 | ||
| GNG12 | cg25189904 | 68,299,493 | 5 | 2 | |
| NOS1AP | cg11231349 | 162,050,657 | 4 | 2 | |
| TMEM51 | cg21913886 | 15,485,346 | 14 | 9 | |
| unassigned | cg03547355 | 227,003,061 | 8 | 2 | |
| unassigned | cg12547807 | 9,473,751 | 9 | 1 | |
| unassigned | cg21393163 | 12,217,630 | 8 | 2 | |
| unassigned | cg26764244 | 68,299,511 | 3 | 3 | |
| 2 | 2q37.1 | cg05951221 | 233,284,402 | 5 | 1 |
| cg03329539 | 233,283,329 | 5 | 2 | ||
| ALPP | cg23667432 | 233,244,439 | 5 | 2 | |
| NFE2L2 | cg26271591 | 178,125,956 | 8 | 6 | |
| SNED1 | cg26718213 | 241,976,081 | 9 | 4 | |
| unassigned | cg27241845 | 233,250,371 | 5 | 2 | |
| 3 | GPX1 | cg18642234 | 49,394,623 | 10 | 5 |
| 5 | AHRR | cg03604011 | 400,201 | 15 | 5 |
| cg03991871 | 368,448 | 9 | 1 | ||
| cg11902777 | 368,843 | 9 | 4 | ||
| cg12806681 | 368,395 | 9 | 2 | ||
| cg14817490 | 392,920 | 15 | 4 | ||
| cg17287155 | 393,347 | 15 | 1 | ||
| cg23576855 | 373,300 | 9 | 7 | ||
| cg23916896 | 368,805 | 9 | 4 | ||
| 6 | 6p21.33 | cg06126421 | 30,720,081 | 16 | 8 |
| CDKN1A | cg15474579 | 36,645,813 | 22 | 8 | |
| IER3 | cg15342087 | 30,720,210 | 16 | 2 | |
| cg24859433 | 30,720,204 | 16 | 3 | ||
| TIAM2 | cg00931843 | 155,442,993 | 6 | 1 | |
| VARS | cg17619755 | 31,760,629 | 16 | 8 | |
| unassigned | cg14753356 | 30,720,109 | 8 | 2 | |
| 7 | C7orf40 | cg03440944 | 45,023,330 | 5 | 1 |
| CNTNAP2 | cg11207515 | 146,904,206 | 14 | 7 | |
| cg25949550 | 145,814,306 | 11 | 8 | ||
| GNA12 | cg19717773 | 2,847,554 | 22 | 22 | |
| HOXA7 | cg08396193 | 27,193,709 | 7 | 1 | |
| LRRN3 | cg11556164 | 110,738,316 | 5 | 5 | |
| MYO1G | cg12803068 | 45,002,919 | 10 | 1 | |
| cg22132788 | 45,002,487 | 10 | 1 | ||
| TNRC18 | cg09022230 | 5,457,226 | 24 | 3 | |
| 8 | ZC3H3 | cg26361535 | 144,576,604 | 8 | 1 |
| unassigned | cg19589396 | 103,937,374 | 15 | 2 | |
| 9 | unassigned | cg01692968 | 108,005,349 | 2 | 2 |
| 10 | ARID5B | cg25953130 | 63,753,550 | 6 | 3 |
| 11 | KCNQ1 | cg07123182 | 2,722,391 | 13 | 2 |
| cg26963277 | 2,722,408 | 13 | 3 | ||
| cg01744331 | 2,722,358 | 13 | 3 | ||
| KCNQ1OT1 | cg16556677 | 2,722,402 | 13 | 2 | |
| PRSS23 | cg11660018 | 86,510,915 | 9 | 2 | |
| cg23771366 | 86,510,999 | 9 | 2 | ||
| unassigned | cg16611234 | 58,870,075 | 10 | 10 | |
| 14 | C14orf43 | cg01731783 | 74,211,789 | 6 | 1 |
| cg10919522 | 74,227,441 | 5 | 1 | ||
| 15 | ANPEP | cg23161492 | 90,357,203 | 19 | 6 |
| SEMA7A | cg00310412 | 74,724,919 | 13 | 9 | |
| 16 | ITGAL | cg09099830 | 30,485,486 | 3 | 2 |
| XYLT1 | cg16794579 | 17,562,419 | 3 | 1 | |
| 17 | LOC100130933 | cg07251887 | 73,641,810 | 6 | 2 |
| STXBP4 | cg07465627 | 53,167,407 | 8 | 4 | |
| 19 | CPAMD8 | cg15159987 | 17,003,890 | 15 | 4 |
| CRTC1 | cg23973524 | 18,873,223 | 12 | 1 | |
| F2RL3 | cg03636183 | 17,000,586 | 17 | 1 | |
| PPP1R15A | cg03707168 | 49,379,127 | 10 | 4 | |
| 21 | ETS2 | cg23110422 | 40,182,073 | 6 | 3 |
| 22 | NCF4 | cg02532700 | 37,257,404 | 8 | 2 |
| Total | 590 | 246 | |||