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. 2017 Aug 18;6:e29397. doi: 10.7554/eLife.29397

Figure 3. Toxic function of SitA1 and SitA3 CTDs.

(A) SitA3-CTD is a toxic tRNase. Expression of the indicated CTDs was induced with arabinose in E. coli, and cell growth monitored by measuring the optical density of the cultures at 600 nm (OD600). OD600 values are reported as the average ± standard error for three independent experiments (left). RNA was isolated after 90 min of toxin expression and analyzed by Northern blot hybridization using probes to the indicated tRNAs (right). The arrow indicates cleaved tRNAUGCAla. (B) SitA1-CTD has DNase activity. E. coli cells were stained with DAPI at 0 hr and after 6 hr of toxin expression. Cells expressing sitA1-CTD became filamentous and lost DAPI staining at 6 hr (left). In contrast, sitA3-CTD expressing cells retained DAPI staining (right), though their nucleoids became compacted (yellow arrow). Bar, 5 μm.

DOI: http://dx.doi.org/10.7554/eLife.29397.008

Figure 3.

Figure 3—figure supplement 1. Alignment of SitA3-CTD with CdiA-CTD tRNase toxins.

Figure 3—figure supplement 1.

SitA3-CTD shares homology with CdiA-CTD domains from Burkholderia pseudomallei 1026b (BP1026B_II2207) and Yersinia pseudotuberculosis YPIII (Ga0077885_11584). Predicted nuclease active-site residues are conserved and marked in red (Morse et al., 2012).