Table 1.
Summary of reads and distribution across kingdoms in the samples from India, Brazil, Puerto Rico and from the isolates taken from the South China Sea.
| Sample Name | Kerala India Mangrove | Brazil Mangrove | South China Sea Ocean Sediment | Puerto Rico | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MGRAST ID | PGD 4671368.3 | MAL 4671369.3 | PYN 4671370.3 | VL1 4671371.3 | Average | STD | BrMgv1 4451033.3 | BrMgv2 4451034.3 | BrMgv3 4451035.3 | BrMgv4 4451036.3 | Average | STD | E201-1 4487294.3 | E201-2 4487295.3 | E208-1 4487376.3 | E208-2 4487377.3 | Average | STD | Rain Forest 4446153.3 | |
| All Reads | Total reads | 3410117 | 3220906 | 3412553 | 3225554 | 3317283 | 108623.6 | 592698 | 107612 | 95675 | 96634 | 223154.8 | 246421.7 | 955453 | 977655 | 831502 | 710468 | 868769.5 | 123583.1 | 520500 |
| Total assigned | 3410032 | 3220854 | 3412501 | 3225512 | 3317225 | 108611.4 | 592698 | 107610 | 95672 | 96632 | 223153 | 246422.8 | 955442 | 977611 | 831489 | 710415 | 868739.3 | 123591.5 | 520483 | |
| Percent total assigned (%) | 99.99750742 | 99.99839 | 99.99848 | 99.9987 | 99.99827 | 0.000523 | 100 | 99.99814 | 99.99686 | 99.99793 | 99.99823 | 0.001303 | 99.99884871 | 99.99549943 | 99.99843656 | 99.99254 | 99.99633 | 0.002935 | 99.99673 | |
| Total unassigned | 85 | 52 | 52 | 42 | 57.75 | 18.76832 | 0 | 2 | 3 | 2 | 1.75 | 1.258306 | 11 | 44 | 13 | 53 | 30.25 | 21.40677 | 17 | |
| Percent total unassigned (%) | 0.002492583 | 0.001614 | 0.001524 | 0.001302 | 0.001733 | 0.000523 | 0 | 0.001859 | 0.003136 | 0.00207 | 0.001766 | 0.001303 | 0.001151286 | 0.004500565 | 0.001563436 | 0.00746 | 0.003669 | 0.002935 | 0.003266 | |
| Archaea | Reads mapped to Archaea | 16934 | 43985 | 59600 | 115670 | 59047.25 | 41660.69 | 13615 | 3946 | 2332 | 3469 | 5840.5 | 5227.031 | 120209 | 126753 | 44972 | 45395 | 84332.25 | 45284.29 | 6262 |
| Percent Archaea of total (%) | 0.496581202 | 1.36561 | 1.746493 | 3.586051 | 1.798684 | 1.301336 | 2.297123 | 3.666877 | 2.437418 | 3.589834 | 2.997813 | 0.731014 | 12.58136193 | 12.96500299 | 5.408525776 | 6.38945 | 9.336085 | 3.992044 | 1.203074 | |
| Percent Archaea of assigned (%) | 0.49659358 | 1.365632 | 1.74652 | 3.586097 | 1.798711 | 1.301351 | 2.297123 | 3.666945 | 2.437495 | 3.589908 | 2.997868 | 0.731035 | 12.58150678 | 12.96558652 | 5.408610336 | 6.389927 | 9.336408 | 3.992115 | 1.203113 | |
| Bacteria | Reads mapped to Bacteria | 3323940 | 3136206 | 3308800 | 3077852 | 3211700 | 123343.5 | 574258 | 102306 | 92059 | 91890 | 215128.3 | 239469.4 | 819037 | 834223 | 765291 | 647811 | 766590.5 | 84528.2 | 508545 |
| Percent Bacteria of total (%) | 97.47290196 | 97.37031 | 96.95967 | 95.42088 | 96.80594 | 0.949626 | 96.8888 | 95.06932 | 96.22054 | 95.09075 | 95.81735 | 0.894065 | 85.72237462 | 85.32897597 | 92.03718091 | 91.18088 | 88.56735 | 3.533234 | 97.70317 | |
| Percent Bacteria of assigned (%) | 97.47533161 | 97.37188 | 96.96114 | 95.42212 | 96.80762 | 0.949982 | 96.8888 | 95.07109 | 96.22356 | 95.09272 | 95.81904 | 0.893494 | 85.72336154 | 85.33281643 | 92.03861987 | 91.18769 | 88.57062 | 3.533945 | 97.70636 | |
| Eukaryota | Reads mapped to Eukaryota | 66029 | 39324 | 42955 | 28309 | 44154.25 | 15857.13 | 4726 | 1329 | 1238 | 1252 | 2136.25 | 1726.963 | 16004 | 16439 | 20596 | 16611 | 17412.5 | 2137.651 | 5455 |
| Percent Eukaryota total (%) | 1.936267876 | 1.220899 | 1.258735 | 0.877648 | 1.323387 | 0.443091 | 0.797371 | 1.234992 | 1.293964 | 1.29561 | 1.155484 | 0.240402 | 1.675016981 | 1.681472503 | 2.476963375 | 2.338036 | 2.042872 | 0.424847 | 1.048031 | |
| Percent Eukaryota assigned (%) | 1.93631614 | 1.220918 | 1.258754 | 0.877659 | 1.323412 | 0.443107 | 0.797371 | 1.235015 | 1.294005 | 1.295637 | 1.155507 | 0.240417 | 1.675036266 | 1.681548182 | 2.477002101 | 2.338211 | 2.042949 | 0.424873 | 1.048065 | |
| Virus | Reads mapped to Virus | 3129 | 1339 | 1146 | 3681 | 2323.75 | 1271.139 | 99 | 29 | 43 | 21 | 48 | 35.1947 | 192 | 196 | 630 | 598 | 404 | 242.8443 | 221 |
| Percent Virus of total (%) | 0.091756383 | 0.041572 | 0.033582 | 0.11412 | 0.070258 | 0.038962 | 0.016703 | 0.026949 | 0.044944 | 0.021731 | 0.027582 | 0.012307 | 0.02009518 | 0.020047972 | 0.075766504 | 0.08417 | 0.05002 | 0.034751 | 0.042459 | |
| Percent Virus of assigned (%) | 0.09175867 | 0.041573 | 0.033582 | 0.114121 | 0.070259 | 0.038962 | 0.016703 | 0.026949 | 0.044945 | 0.021732 | 0.027582 | 0.012308 | 0.020095411 | 0.020048874 | 0.075767689 | 0.084176 | 0.050022 | 0.034753 | 0.042461 | |
| Miscellaneous | other sequences | 85 | 52 | 52 | 42 | 57.75 | 18.76832 | 0 | 2 | 3 | 2 | 1.75 | 1.258306 | 11 | 44 | 13 | 53 | 30.25 | 21.40677 | 17 |
| unassigned (%) | 0.002492583 | 0.001614 | 0.001524 | 0.001302 | 0.001733 | 0.000523 | 0 | 0.001859 | 0.003136 | 0.00207 | 0.001766 | 0.001303 | 0.001151286 | 0.004500565 | 0.001563436 | 0.00746 | 0.003669 | 0.002935 | 0.003266 | |
| unclassified sequences (%) | 0.002492645 | 0.001614 | 0.001524 | 0.001302 | 0.001733 | 0.000523 | 0 | 0.001859 | 0.003136 | 0.00207 | 0.001766 | 0.001303 | 0.0011513 | 0.004500768 | 0.00156346 | 0.00746 | 0.003669 | 0.002935 | 0.003266 | |