Table 2.
AVBD1 SNP frequencies within pooled genomic DNA samples. Encoded amino acids are presented using the one letter code system with N:Asparagine; S:Serine; Y:Tyrosine; H:Histidine. Only the most common amino acid combinations of the AvBD1 peptides synthesised by LX, LY and LZ birds are presented
| AvBD1 SNP | Bird Line | T base % | G base % | C Base % | ±SEM | Amino acid |
|---|---|---|---|---|---|---|
| AvBD1a c.104 (A > G) |
X (120) | 100 | 0 | 0 | N (AAT) | |
| Y (120) | 10.7 | 89.3 | 6.6 | S (AGT) | ||
| Z (80) | 48.8 | 51.2 | 1.2 | N/S | ||
| Rs15457749 c.134 (A > C) |
X (120) | 100 | 0 | 0 | Y (TAC) | |
| Y (120) | 4.3 | 95.7 | 4.3 | S (TCC) | ||
| Z (100) | 38.9 | 61.1 | 1.1 | Y | ||
| Rs15457747 c.169 (C > T) |
X (120) | 13.8 | 86.2 | 3.2 | H (CAC) | |
| Y (120) | 89.7 | 10.3 | 7.4 | Y (TAC) | ||
| Z (100) | 61.4 | 38.6 | 1.6 | Y |