REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Alexa488 conjugated anti-puromycin | Millipore | Cat# MABE343-AF488; RRID: AB_2566826 |
Rabbit anti-β-actin | Abcam | Cat# ab8227; RRID: AB_2305186 |
Rabbit anti-β-catenin | Sigma-Aldrich | Cat# C2206; RRID: AB_476831 |
HRP-conjugated secondary antibodies | Abcam | Cat# ab97080; RRID: AB_10679808 |
Chemicals, Peptides, and Recombinant Proteins | ||
Cycloheximide | Sigma-Aldrich | Cat# C4859 |
Anisomycin | Sigma-Aldrich | Cat# A9789 |
Cy5-UTP | PerkinElmer | Cat# NEL583001EA |
Biotin-11-UTP | PerkinElmer | Cat# NEL543001EA |
1,1'-Dioctadecyl-3,3,3',3'-Tetramethylindocarbocyanine Perchlorate (Dil) | Thermo Fisher Scientific | Cat# D282 |
Critical Commercial Assays | ||
RNeasy Mini Kit | QIAGEN | Cat# 74104 |
SuperScript III First-Strand Synthesis System | Thermo Fisher Scientific | Cat# 18080051 |
QuikChange II Site-directed Mutagenesis Kit | Agilent Technologies | Cat# 200555 |
QIAshredder | QIAGEN | Cat# 79654 |
RNA 6000 Pico Kit | Agilent Technologies | Cat# 5067-1513 |
QuantiTect SYBR Green PCR kit | QIAGEN | Cat# 204141 |
QIAamp DNA Mini Kit | QIAGEN | Cat# 51304 |
QIAquick PCR Purification Kit | QIAGEN | Cat# 28104 |
High Sensitivity DNA Kit | Agilent Technologies | Cat# 5067-4626 |
mMESSAGE mMACHINE SP6 Transcription Kit | Thermo Fisher Scientific | Cat# AM1340 |
Poly(A) Tailing Kit | Thermo Fisher Scientific | Cat# AM1350 |
Experimental Models: Organisms/Strains | ||
X. laevis | Nasco | https://www.enasco.com/product/LM00715MX/; https://www.enasco.com/product/LM00535MX/ |
Oligonucleotides | ||
Morpholino: β-actin MO 5'-CAATATCGTCTTCCATTGTGATCTG-3' |
Leung et al., 2006; Gene Tools | Xenbase, RRID: SCR_003280: XB-MORPHOLINO-17249112 |
Morpholino: Control MO 5'-CCTCTTACCTCAGTTACAATTTATA-3' |
Gene Tools | N/A |
Primer: actb 5' UTR, Venus and the linker 5'-TACTCGGATCCGGCTCAGTGACCCGCCCGCATAGAAAGGAGACAGTCTGTGTGCGTCCAACCCTCAGATCACAATGGTTAGTAAGGGCG-3' 5'-GTATGAATTCAAGCTTTTTGTAAAGTTCATCC-3' |
Sigma-Aldrich | N/A |
Primer: linker, actb CDS, actb 3' UTR 5'-GCTTGAATTCAAAATGGAAGACGATATTG-3' 5'-CGTAGCGGCCGCGTGAAACAACATAAGT-3' |
Sigma-Aldrich | N/A |
Primer: morpholino insensitive actb 5'-CAACCCTCAGATCACAATGGAGGATGACATAGCCGCACTGGTCGTTG-3' |
Sigma-Aldrich | N/A |
Primers for rps13 RT-qPCR: 5'-CTTCAAACTGGCCAAGAAGG-3' 5'-GGCCAGAGCCTTAGACTTGA-3' |
Sigma-Aldrich | N/A |
Primers for actb RT-qPCR: 5'-TACTCTTTTGTTGGCGCTTG-3' 5'-GGGCAACACTGAGAGGGTAG-3' |
Sigma-Aldrich | N/A |
Primers for sdha RT-qPCR: 5'-AGACTCAACATGCAGAAGACCA-3' 5'-TCCATTGCAGAATTGATGACAC-3' |
Sigma-Aldrich | N/A |
Recombinant DNA | ||
pCS2+mGFP | Das et al., 2003 | N/A |
pCS2+mRFP | Poggi et al., 2005 | N/A |
Mito-GFP | Michael Coleman (Department of Clinical Neuroscience, University of Cambridge, UK) | N/A |
pCS2+MO insensitive β-actin/mGFP dual promoter construct | This paper | N/A |
pCS2+Venus-β-actin | This paper | N/A |
pCS2+Venus | This paper | N/A |
Software and Algorithms | ||
Fiji | Schindelin et al., 2012 | Fiji, RRID: SCR_002285 |
Descriptor-based registration | Preibisch et al., 2010 | http://imagej.net/SPIM_Registration |
Simple Neurite Tracer | Longair et al., 2011 | https://imagej.net/Simple_Neurite_Tracer |
Colocalization test | Tony Collins | https://imagej.net/Colocalization_Test |
Bleach Correction | Miura et al., 2014 | https://imagej.net/Bleach_Correction |
Volocity | v.6.3.1 | Volocity 3D Image Analysis Software, RRID: SCR_002668 |
GraphPad PRISM | v.6.01 | GraphPad Prism, RRID: SCR_002798 |
MATLAB | v.R2015b | MATLAB, RRID: SCR_001622 |
Batch Analysis of Mean and SD. Evolution | This paper; Cambridge repository server | https://doi.org/10.17863/CAM.9542 |