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. 2017 Aug 16;95(4):852–868.e8. doi: 10.1016/j.neuron.2017.07.016
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Alexa488 conjugated anti-puromycin Millipore Cat# MABE343-AF488; RRID: AB_2566826
Rabbit anti-β-actin Abcam Cat# ab8227; RRID: AB_2305186
Rabbit anti-β-catenin Sigma-Aldrich Cat# C2206; RRID: AB_476831
HRP-conjugated secondary antibodies Abcam Cat# ab97080; RRID: AB_10679808

Chemicals, Peptides, and Recombinant Proteins

Cycloheximide Sigma-Aldrich Cat# C4859
Anisomycin Sigma-Aldrich Cat# A9789
Cy5-UTP PerkinElmer Cat# NEL583001EA
Biotin-11-UTP PerkinElmer Cat# NEL543001EA
1,1'-Dioctadecyl-3,3,3',3'-Tetramethylindocarbocyanine Perchlorate (Dil) Thermo Fisher Scientific Cat# D282

Critical Commercial Assays

RNeasy Mini Kit QIAGEN Cat# 74104
SuperScript III First-Strand Synthesis System Thermo Fisher Scientific Cat# 18080051
QuikChange II Site-directed Mutagenesis Kit Agilent Technologies Cat# 200555
QIAshredder QIAGEN Cat# 79654
RNA 6000 Pico Kit Agilent Technologies Cat# 5067-1513
QuantiTect SYBR Green PCR kit QIAGEN Cat# 204141
QIAamp DNA Mini Kit QIAGEN Cat# 51304
QIAquick PCR Purification Kit QIAGEN Cat# 28104
High Sensitivity DNA Kit Agilent Technologies Cat# 5067-4626
mMESSAGE mMACHINE SP6 Transcription Kit Thermo Fisher Scientific Cat# AM1340
Poly(A) Tailing Kit Thermo Fisher Scientific Cat# AM1350

Experimental Models: Organisms/Strains

X. laevis Nasco https://www.enasco.com/product/LM00715MX/; https://www.enasco.com/product/LM00535MX/

Oligonucleotides

Morpholino: β-actin MO
5'-CAATATCGTCTTCCATTGTGATCTG-3'
Leung et al., 2006; Gene Tools Xenbase, RRID: SCR_003280: XB-MORPHOLINO-17249112
Morpholino: Control MO
5'-CCTCTTACCTCAGTTACAATTTATA-3'
Gene Tools N/A
Primer: actb 5' UTR, Venus and the linker
5'-TACTCGGATCCGGCTCAGTGACCCGCCCGCATAGAAAGGAGACAGTCTGTGTGCGTCCAACCCTCAGATCACAATGGTTAGTAAGGGCG-3'
5'-GTATGAATTCAAGCTTTTTGTAAAGTTCATCC-3'
Sigma-Aldrich N/A
Primer: linker, actb CDS, actb 3' UTR
5'-GCTTGAATTCAAAATGGAAGACGATATTG-3'
5'-CGTAGCGGCCGCGTGAAACAACATAAGT-3'
Sigma-Aldrich N/A
Primer: morpholino insensitive actb
5'-CAACCCTCAGATCACAATGGAGGATGACATAGCCGCACTGGTCGTTG-3'
Sigma-Aldrich N/A
Primers for rps13 RT-qPCR: 5'-CTTCAAACTGGCCAAGAAGG-3'
5'-GGCCAGAGCCTTAGACTTGA-3'
Sigma-Aldrich N/A
Primers for actb RT-qPCR: 5'-TACTCTTTTGTTGGCGCTTG-3'
5'-GGGCAACACTGAGAGGGTAG-3'
Sigma-Aldrich N/A
Primers for sdha RT-qPCR: 5'-AGACTCAACATGCAGAAGACCA-3'
5'-TCCATTGCAGAATTGATGACAC-3'
Sigma-Aldrich N/A

Recombinant DNA

pCS2+mGFP Das et al., 2003 N/A
pCS2+mRFP Poggi et al., 2005 N/A
Mito-GFP Michael Coleman (Department of Clinical Neuroscience, University of Cambridge, UK) N/A
pCS2+MO insensitive β-actin/mGFP dual promoter construct This paper N/A
pCS2+Venus-β-actin This paper N/A
pCS2+Venus This paper N/A

Software and Algorithms

Fiji Schindelin et al., 2012 Fiji, RRID: SCR_002285
Descriptor-based registration Preibisch et al., 2010 http://imagej.net/SPIM_Registration
Simple Neurite Tracer Longair et al., 2011 https://imagej.net/Simple_Neurite_Tracer
Colocalization test Tony Collins https://imagej.net/Colocalization_Test
Bleach Correction Miura et al., 2014 https://imagej.net/Bleach_Correction
Volocity v.6.3.1 Volocity 3D Image Analysis Software, RRID: SCR_002668
GraphPad PRISM v.6.01 GraphPad Prism, RRID: SCR_002798
MATLAB v.R2015b MATLAB, RRID: SCR_001622
Batch Analysis of Mean and SD. Evolution This paper; Cambridge repository server https://doi.org/10.17863/CAM.9542