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Performance effect of PairHMM library implementation in GATK 3.7 HaplotypeCaller.
| PairHMM library | Execution time of HaplotypeCaller using GCAT genome data (in Hours) | Execution time of HaplotypeCaller using Platinum genome data (in Hours) |
|---|---|---|
| No PairHMM library | 1.14 | 30.43 |
| VectorPairHMM library | 0.902 | 17.46 |
