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. 2017 Aug 22;7:9042. doi: 10.1038/s41598-017-07995-y

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Comparison of chr^RC with Fom001 contig 127 reveals a highly dynamic central region containing the majority of the miniature impala (mimp) TEs and candidate effector genes of the Forc genome. (A) The chromosomes of the Fom and Forc strains are mostly syntenic, with large stretches showing 100% identity in this nucmer alignment. (B) The dynamic central region of the chromosome, about 700 kb in size, has the highest repeat density, 30 of the 35 mimps of the Forc genome and the majority of the Forc candidate effector genes, including SIX9, 13, 6 and 11 and SMP1. Additionally, the two FTF1 homologs present in the Forc genome are found here.