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. 2017 Aug 22;7:9078. doi: 10.1038/s41598-017-09515-4

Table 1.

Small RNA sequencing and annotation statistics of 22 samples used in the study.

Fish family Read count and annotation statistics Putative microRNA count and annotation statistics
Number of raw reads Number of reads after trimming and filtration Total number putative microRNAs detected Putative microRNAs annotated to Mirbase: Count (Percentage) Number of non-redundant annotated microRNAs
195i 11,168,118 9,881,880 150,902 35,355 (23.4%) 1,221
262ehi 14,841,753 12,357,559 318,231 42,577 (13.4%) 1,335
277e 11,012,983 8,522,071 160,763 31,794 (19.8%) 1,188
366fb 10,352,049 7,551,995 149,061 31,321 (21.0%) 1,212
390eia 13,682,126 12,138,640 219,575 42,283 (19.3%) 1,277
399hb 10,313,768 7,804,634 168,925 31,952 (18.9%) 1,194
405i 10,309,353 7,979,759 145,673 31,256 (21.5%) 1,173
556dfhb 9,954,340 8,203,301 146,394 32,682 (22.3%) 1,205
565d 10,384,499 7,709,062 189,110 30,388 (16.1%) 1,236
580e 7,490,428 4,261,515 147,037 24,980 (17.0%) 1,115
595 g 12,040,061 8,372,165 319,839 35,112 (11.0%) 1,209
191cj 21,246,629 18,766,660 247,811 30,175 (12.2%) 1,092
193gja 25,361,890 19,439,379 141,126 35,160 (24.9%) 1,121
201cja 12,676,918 11,296,840 138,647 21,561 (15.6%) 989
357c 19,472,380 14,507,911 251,792 29,545 (11.7%) 1,054
408 g 13,845,919 12,152,718 94,556 21,053 (22.3%) 948
51hi 20,964,015 17,185,620 241,354 37,891 (15.7%) 1,246
559dfjb 13,714,117 11,099,365 136,184 18,551 (13.6%) 966
593d 23,474,784 19,593,896 573,692 42,111 (7.3%) 1,261
597c 22,048,522 20,079,565 255,680 33,440 (13.1%) 1,160
65e 15,949,419 13,873,696 103,005 22,097 (21.5%) 998
194a 9,115,039 7,974,575 138,450 31,695 (22.9%) 1,189

Table shows name of fish families used for different traits, number of raw reads, number of reads after trimming/filtration, total number of putative microRNAs detected in each sample and number of putative microRNAs annotated to the miRBase microRNA reference. Last column represents the number of non-redundant microRNAs annotated to MiRBase microRNA reference in each sample. Note: aHigh WBW, bLow WBW, cHigh muscle yield, dLow muscle yield, eHigh crude fat, fLow crude fat, gHigh shear, hLow shear, iHigh muscle whiteness, jLow muscle whiteness and families used for more than one muscle traits are indicated with corresponding multiple superscripts.