Table 1.
Proteins participating in cross-linking to chromosomal DNA in human fibrosarcoma HT1080 cells treated with cisplatin (100 μM for 3 h).
| Swiss-Port ID | Identified Proteins | % Coverage | No. of Unique Peptides | No. of Assigned Spectra | Primary Cellular Function | Protein MW (Da) |
|---|---|---|---|---|---|---|
|
| ||||||
| P62258 | 14-3-3 Protein epsilon | 24 | 5 | 11 | Cell Signaling/Motility/Architecture | 29175.0 |
| P62736 | Actin, aortic smooth muscle | 24 | 8 | 37 | 42010.1 | |
| P60709 | Actin, cytoplasmic 1 (β-actin) | 35 | 7 | 97 | 41737.8 | |
| Q01518 | Adenylyl cyclase-associated protein 1 | 12 | 4 | 9 | 51855.5 | |
| P12814 | α-Actinin-1 | 13 | 10 | 19 | 103061.1 | |
| O43707 | α-Actinin-4 | 10 | 6 | 11 | 104857.2 | |
| P04083 | Annexin A1 | 37 | 9 | 22 | 38715.9 | |
| P07355 | Annexin A2 | 58 | 15 | 36 | 38606.1 | |
| P23528 | Cofilin-1 | 45 | 5 | 15 | 18503.2 | |
| Q07065 | Cytoskeleton-associated protein 4 | 9 | 4 | 7 | 66022.2 | |
| Q16643 | Drebrin | 14 | 6 | 10 | 71428.6 | |
| P14625 | Endoplasmin | 38 | 24 | 80 | 92471.7 | |
| P15311 | Ezrin | 9 | 5 | 9 | 69414.7 | |
| P21333 | Filamin-A | 3 | 4 | 6 | 280729.4 | |
| Q99988 | Growth/differentiation factor 15 | 23 | 6 | 12 | 34154.8 | |
| P07900 | Heat shock protein HSP 90-α | 23 | 13 | 45 | 84663.2 | |
| P08238 | Heat shock protein HSP 90-β | 21 | 12 | 75 | 83267.3 | |
| O95373 | Importin-7 | 7 | 5 | 15 | 119519.5 | |
| P05787 | Keratin, type II cytoskeletal 8 | 42 | 18 | 74 | 53706.2 | |
| P02545 | Prelamin-A/C | 53 | 34 | 93 | 74140.7 | |
| P20700 | Lamin-B1 | 36 | 16 | 29 | 66409.6 | |
| Q03252 | Lamin-B2 | 22 | 13 | 46 | 67689.8 | |
| Q15185 | Prostaglandin E synthase 3 | 42 | 6 | 15 | 18697.9 | |
| P61026 | Ras-related protein Rab-10 | 28 | 5 | 9 | 22542.1 | |
| Q13813 | Spectrin α chain, brain | 37 | 75 | 161 | 284542.7 | |
| Q01082 | Spectrin β chain, brain 1 | 27 | 46 | 91 | 274613.4 | |
| Q9UH99 | SUN domain-containing protein 2 | 10 | 4 | 9 | 80312.2 | |
| P09493 | Tropomyosin α-1 chain | 14 | 4 | 4 | 32710.0 | |
| Q71U36 | Tubulin α-1A chain | 41 | 14 | 53 | 50135.7 | |
| P07437 | Tubulin β chain | 16 | 4 | 20 | 49670.6 | |
| Q13885 | Tubulin β-2A | 36 | 11 | 91 | 49907.1 | |
| P68371 | Tubulin β-2C chain | 20 | 6 | 18 | 49830.7 | |
| Q9BUF5 | Tubulin β-6 chain | 18 | 4 | 6 | 49857.2 | |
| P08670 | Vimentin | 65 | 28 | 990 | 53652.7 | |
|
| ||||||
| P31946 | 14-3-3 protein β/α | 19 | 5 | 10 | Cellular Homeostasis/Cell Cycle | 28083.1 |
| P62244 | 40S ribosomal protein S15a | 29 | 4 | 9 | 14840.0 | |
| P62847 | 40S ribosomal protein S24 | 29 | 4 | 8 | 15423.8 | |
| P61247 | 40S ribosomal protein S3a | 41 | 10 | 23 | 29945.3 | |
| P62753 | 40S ribosomal protein S6 | 23 | 5 | 11 | 28681.7 | |
| P08865 | 40S ribosomal protein SA | 36 | 8 | 15 | 32854.1 | |
| P10809 | 60 kDa heat shock protein, mitochondrial | 23 | 8 | 19 | 61055.7 | |
| P11021 | 78 kDa glucose-regulated protein OS=Homo | 23 | 11 | 24 | 72334.7 | |
| P84077 | ADP-ribosylation factor 1 | 34 | 4 | 8 | 20697.6 | |
| P18085 | ADP-ribosylation factor 4 | 22 | 4 | 9 | 20511.6 | |
| P15144 | Aminopeptidase N | 25 | 18 | 40 | 109542.4 | |
| Q9UKV3 | Apoptotic chromatin condensation inducer in the nucleus | 3 | 4 | 7 | 151887.9 | |
| P25705 | ATP synthase subunit α, mitochondrial | 14 | 7 | 10 | 59752.1 | |
| P06576 | ATP synthase subunit β, mitochondrial | 10 | 4 | 7 | 56560.6 | |
| O00571 | ATP-dependent RNA helicase DDX3X | 9 | 4 | 8 | 73245.8 | |
| P27824 | Calnexin | 23 | 14 | 36 | 67570.2 | |
| P27797 | Calreticulin | 52 | 18 | 54 | 48142.9 | |
| Q9UQ88 | Cell division protein kinase 11A | 14 | 10 | 22 | 90976.0 | |
| Q68CQ4 | Digestive organ expansion factor homolog | 12 | 7 | 9 | 87057.4 | |
| P62495 | Eukaryotic peptide chain release factor subunit 1 | 13 | 4 | 7 | 49032.6 | |
| Q99613 | Eukaryotic translation initiation factor 3 subunit C | 6 | 5 | 7 | 105347.2 | |
| O60841 | Eukaryotic translation initiation factor 5B | 12 | 11 | 24 | 138831.5 | |
| P02751 | Fibronectin | 8 | 10 | 21 | 262616.9 | |
| P09382 | Galectin-1 | 39 | 5 | 11 | 14715.8 | |
| P14314 | Glucosidase 2 subunit β | 11 | 5 | 6 | 59425.8 | |
| P04406 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) | 35 | 8 | 18 | 36053.4 | |
| P62826 | GTP-binding nuclear protein Ran | 28 | 5 | 10 | 24423.1 | |
| P11142 | Heat shock cognate 71 kDa protein | 13 | 5 | 16 | 70899.8 | |
| Q1KMD3 | Heterogeneous nuclear ribonucleoprotein U-like protein 2 | 20 | 13 | 24 | 85105.2 | |
| Q9Y4L1 | Hypoxia up-regulated protein 1 | 18 | 12 | 28 | 111336.8 | |
| P05556 | Integrin β-1 | 16 | 10 | 20 | 88415.1 | |
| P05783 | Keratin, type I cytoskeletal 18 | 53 | 21 | 61 | 48059.0 | |
| P35580 | Myosin-10 | 8 | 11 | 25 | 229005.3 | |
| P35579 | Myosin-9 | 25 | 38 | 96 | 226537.5 | |
| P07196 | Neurofilament light polypeptide | 53 | 25 | 69 | 61517.8 | |
| Q14978 | Nucleolar and coiled-body phosphoprotein 1 | 8 | 5 | 10 | 73604.2 | |
| Q13823 | Nucleolar GTP-binding protein 2 | 10 | 5 | 9 | 83656.0 | |
| Q9Y2X3 | Nucleolar protein 58 | 21 | 8 | 17 | 59580.2 | |
| P19338 | Nucleolin (C-23) | 36 | 25 | 305 | 76615.9 | |
| P06748 | Nucleophosmin | 47 | 10 | 52 | 32575.5 | |
| Q99733 | Nucleosome assembly protein 1-like 4 | 21 | 6 | 11 | 42823.9 | |
| P62937 | Peptidyl-prolyl cis-trans isomerase A | 28 | 5 | 9 | 18012.9 | |
| Q13427 | Peptidyl-prolyl cis-trans isomerase G | 5 | 4 | 6 | 88619.0 | |
| Q06830 | Peroxiredoxin-1 | 59 | 9 | 18 | 22110.9 | |
| P18669 | Phosphoglycerate mutase 1 | 25 | 4 | 6 | 28804.8 | |
| P13796 | Plastin-2 | 15 | 6 | 10 | 70292.1 | |
| O00622 | Protein CYR61 | 21 | 8 | 15 | 42026.0 | |
| P07237 | Protein disulfide-isomerase | 38 | 15 | 38 | 57118.1 | |
| P13667 | Protein disulfide-isomerase A4 | 13 | 9 | 17 | 72934.0 | |
| Q58FF3 | Putative endoplasmin-like protein | 9 | 4 | 10 | 45859.7 | |
| Q58FF8 | Putative heat shock protein HSP 90-β-2 | 18 | 6 | 11 | 44350.2 | |
| Q58FF7 | Putative heat shock protein HSP 90-β-3 | 20 | 14 | 170 | 68326.5 | |
| P14618 | Pyruvate kinase isozymes M1/M2 | 13 | 5 | 12 | 57937.5 | |
| P51149 | Ras-related protein Rab-7a | 33 | 6 | 10 | 23490.0 | |
| Q14692 | Ribosome biogenesis protein BMS1 homolog | 8 | 6 | 8 | 145812.2 | |
| Q14137 | Ribosome biogenesis protein BOP1 | 23 | 12 | 20 | 83629.3 | |
| Q9Y265 | RuvB-like 1 | 16 | 6 | 10 | 50229.4 | |
| P62136 | Serine/threonine-protein phosphatase PP1-α catalytic subunit | 25 | 6 | 9 | 37513.9 | |
| Q9BXP5 | Serrate RNA effector molecule homolog | 16 | 11 | 16 | 100669.7 | |
| Q9NQZ2 | Something about silencing protein 10 | 19 | 10 | 35 | 54559.2 | |
| P78371 | T-complex protein 1 subunit β | 13 | 4 | 7 | 57489.9 | |
| P40227 | T-complex protein 1 subunit ζ | 17 | 4 | 7 | 58025.3 | |
| P37802 | Transgelin-2 | 23 | 4 | 7 | 22391.9 | |
| P43307 | Translocon-associated protein subunit α | 20 | 4 | 9 | 32236.0 | |
| Q9BV38 | WD repeat-containing protein 18 | 16 | 4 | 4 | 47405.1 | |
| Q86VM9 | Zinc finger CCCH domain-containing protein 18 | 11 | 6 | 10 | 106379.8 | |
|
| ||||||
| P23396 | 40S ribosomal protein S3 | 35 | 7 | 14 | DNA Damage Response/DNA Repair | 26688.6 |
| Q9Y5B9 | FACT complex subunit SPT16 | 40 | 41 | 113 | 119917.4 | |
| Q08945 | FACT complex subunit SSRP1 | 51 | 29 | 185 | 81077.6 | |
| P09429 | High mobility group protein B1 (HMG B1) | 23 | 5 | 22 | 24894.7 | |
| P26583 | High mobility group protein B2 (HMG B2) | 45 | 11 | 32 | 24034.6 | |
| P17096 | High mobility group protein HMG-I/HMG-Y | 45 | 5 | 10 | 11676.2 | |
| P16403 | Histone H1D | 19 | 5 | 14 | 21365.8 | |
| Q96QV6 | Histone H2A type 1-A | 40 | 5 | 18 | 14234.2 | |
| Q96A08 | Histone H2B type 1-A | 28 | 4 | 9 | 14168.0 | |
| P33778 | Histone H2B type 1-B | 36 | 8 | 31 | 13950.8 | |
| P62805 | Histone H4 | 54 | 6 | 79 | 11367.7 | |
| P09874 | Poly [ADP-ribose] polymerase 1 (PARP-1) | 4 | 4 | 5 | 113087.8 | |
| Q9NY61 | Protein AATF | 41 | 17 | 37 | 63135.0 | |
| B2RPK0 | Putative high mobility group protein B1-like 1 | 32 | 10 | 41 | 24238.8 | |
| P23246 | Splicing factor, proline- and glutamine-rich | 16 | 7 | 11 | 76149.5 | |
| Q9UIG0 | Tyrosine-protein kinase BAZ1B | 5 | 6 | 10 | 170907.0 | |
| P13010 | X-ray repair cross-complementing protein 5 (XRCC-5 or Ku80/86) | 11 | 4 | 10 | 82707.1 | |
| P12956 | X-ray repair cross-complementing protein 6 (XRCC-6 or Ku70) | 27 | 12 | 28 | 69846.4 | |
|
| ||||||
| Q15029 | 116 kDa U5 small nuclear ribonucleoprotein component | 13 | 9 | 12 | RNA Processing/mRNA Splicing | 109438.1 |
| P62081 | 40S ribosomal protein S7 | 32 | 4 | 8 | 22127.5 | |
| P62913 | 60S ribosomal protein L11 | 21 | 4 | 8 | 20253.2 | |
| Q08211 | ATP-dependent RNA helicase A | 8 | 7 | 13 | 140961.5 | |
| Q9NVP1 | ATP-dependent RNA helicase DDX18 | 9 | 5 | 11 | 75409.7 | |
| O00148 | ATP-dependent RNA helicase DDX39 | 9 | 4 | 6 | 49129.8 | |
| Q9H583 | HEAT repeat-containing protein 1 | 3 | 5 | 8 | 242378.8 | |
| Q32P51 | Heterogeneous nuclear ribonucleoprotein A1-like 2 | 27 | 7 | 17 | 34225.4 | |
| P51991 | Heterogeneous nuclear ribonucleoprotein A3 | 25 | 8 | 21 | 39595.1 | |
| O60812 | Heterogeneous nuclear ribonucleoprotein C-like 1 | 29 | 13 | 279 | 32142.7 | |
| P38159 | Heterogeneous nuclear ribonucleoprotein G | 22 | 9 | 19 | 42333.7 | |
| P31943 | Heterogeneous nuclear ribonucleoprotein H | 21 | 6 | 15 | 49229.8 | |
| P31942 | Heterogeneous nuclear ribonucleoprotein H3 | 16 | 4 | 10 | 36927.6 | |
| P61978 | Heterogeneous nuclear ribonucleoprotein K | 41 | 12 | 24 | 50978.5 | |
| P14866 | Heterogeneous nuclear ribonucleoprotein L | 16 | 6 | 13 | 64132.8 | |
| P52272 | Heterogeneous nuclear ribonucleoprotein M | 16 | 9 | 18 | 77517.3 | |
| O60506 | Heterogeneous nuclear ribonucleoprotein Q | 15 | 9 | 15 | 69603.5 | |
| Q00839 | Heterogeneous nuclear ribonucleoprotein U | 37 | 29 | 78 | 90585.2 | |
| P22626 | Heterogeneous nuclear ribonucleoproteins A2/B1 | 33 | 10 | 28 | 37430.3 | |
| P07910 | Heterogeneous nuclear ribonucleoproteins C1/C2 | 48 | 13 | 739 | 33607.5 | |
| Q9UKD2 | mRNA turnover protein 4 homolog | 51 | 13 | 37 | 27561.3 | |
| P78316 | Nucleolar protein 14 | 7 | 5 | 7 | 97671.9 | |
| O00567 | Nucleolar protein 56 | 24 | 10 | 18 | 66052.0 | |
| Q9NR30 | Nucleolar RNA helicase 2 | 14 | 9 | 13 | 87346.0 | |
| P12270 | Nucleoprotein TPR | 16 | 30 | 52 | 267289.3 | |
| O00541 | Pescadillo homolog | 36 | 19 | 55 | 68004.9 | |
| Q15365 | Poly(rC)-binding protein 1 | 22 | 5 | 8 | 37498.2 | |
| P26599 | Polypyrimidine tract-binding protein 1 | 30 | 9 | 20 | 57222.5 | |
| Q9HCG8 | Pre-mRNA-splicing factor CWC22 homolog | 4 | 4 | 11 | 105470.2 | |
| Q92841 | Probable ATP-dependent RNA helicase DDX17 | 9 | 5 | 8 | 72373.0 | |
| P17844 | Probable ATP-dependent RNA helicase DDX5 | 13 | 7 | 11 | 69149.7 | |
| P46087 | Putative ribosomal RNA methyltransferase NOP2 | 26 | 18 | 35 | 89303.6 | |
| Q8IY81 | Putative rRNA methyltransferase 3 | 34 | 19 | 40 | 96560.5 | |
| O76021 | Ribosomal L1 domain-containing protein 1 | 18 | 7 | 12 | 54974.7 | |
| Q9NW13 | RNA-binding protein 28 | 18 | 12 | 26 | 85739.1 | |
| Q9UKM9 | RNA-binding protein Raly | 37 | 11 | 22 | 32463.9 | |
| Q15287 | RNA-binding protein with serine-rich domain 1 | 26 | 6 | 30 | 34209.6 | |
| Q9Y3B9 | RRP15-like protein | 17 | 5 | 9 | 31484.5 | |
| Q8IYB3 | Serine/arginine repetitive matrix protein 1 | 8 | 4 | 7 | 102337.5 | |
| Q13435 | Splicing factor 3B subunit 2 | 11 | 9 | 17 | 100229.4 | |
| Q07955 | Splicing factor, arginine/serine-rich 1 | 39 | 9 | 16 | 27745.1 | |
| O75494 | Splicing factor, arginine/serine-rich 10 | 23 | 5 | 10 | 31301.7 | |
| P84103 | Splicing factor, arginine/serine-rich 3 | 29 | 5 | 11 | 19330.0 | |
| Q08170 | Splicing factor, arginine/serine-rich 4 | 14 | 7 | 15 | 56680.0 | |
| Q13243 | Splicing factor, arginine/serine-rich 5 | 19 | 5 | 12 | 31264.8 | |
| Q16629 | Splicing factor, arginine/serine-rich 7 | 15 | 4 | 6 | 27367.5 | |
| P62995 | Transformer-2 protein homolog beta | 17 | 4 | 10 | 33666.7 | |
| P09661 | U2 small nuclear ribonucleoprotein A′ | 28 | 5 | 7 | 28417.1 | |
| O00566 | U3 small nucleolar ribonucleoprotein protein MPP10 | 33 | 15 | 38 | 78866.8 | |
| O75643 | U5 small nuclear ribonucleoprotein 200 kDa helicase | 4 | 6 | 11 | 244513.8 | |
| Q96MU7 | YTH domain-containing protein 1 | 9 | 7 | 12 | 84700.6 | |
|
| ||||||
| P62280 | 40S ribosomal protein S11 | 42 | 8 | 18 | Transcriptional Regulation/Translation | 18431.3 |
| P62277 | 40S ribosomal protein S13 | 30 | 4 | 7 | 17223.3 | |
| P62263 | 40S ribosomal protein S14 | 36 | 4 | 9 | 16272.9 | |
| P62249 | 40S ribosomal protein S16 | 45 | 7 | 14 | 16445.9 | |
| P08708 | 40S ribosomal protein S17 | 55 | 5 | 14 | 15550.5 | |
| P62269 | 40S ribosomal protein S18 | 36 | 6 | 12 | 17719.3 | |
| P15880 | 40S ribosomal protein S2 | 23 | 6 | 10 | 31325.2 | |
| P62266 | 40S ribosomal protein S23 | 34 | 7 | 14 | 15807.7 | |
| P62701 | 40S ribosomal protein S4 | 21 | 5 | 8 | 29599.3 | |
| P46782 | 40S ribosomal protein S5 | 35 | 7 | 11 | 22877.0 | |
| P62241 | 40S ribosomal protein S8 | 42 | 7 | 11 | 24206.4 | |
| P46781 | 40S ribosomal protein S9 | 53 | 13 | 29 | 22592.5 | |
| Q8NHW5 | 60S acidic ribosomal protein P0-like | 18 | 5 | 9 | 34365.1 | |
| Q96L21 | 60S ribosomal protein L10-like | 21 | 5 | 14 | 24519.2 | |
| P30050 | 60S ribosomal protein L12 | 49 | 6 | 10 | 17819.1 | |
| P26373 | 60S ribosomal protein L13 | 33 | 7 | 11 | 24262.2 | |
| P40429 | 60S ribosomal protein L13a | 33 | 12 | 26 | 23577.9 | |
| P50914 | 60S ribosomal protein L14 | 37 | 8 | 22 | 23432.3 | |
| P61313 | 60S ribosomal protein L15 | 39 | 8 | 18 | 24146.5 | |
| P18621 | 60S ribosomal protein L17 | 31 | 5 | 11 | 21397.4 | |
| Q07020 | 60S ribosomal protein L18 | 35 | 6 | 19 | 21635.2 | |
| Q02543 | 60S ribosomal protein L18a | 52 | 10 | 23 | 20762.6 | |
| P84098 | 60S ribosomal protein L19 | 32 | 7 | 24 | 23467.4 | |
| P46778 | 60S ribosomal protein L21 | 34 | 5 | 12 | 18565.0 | |
| P62829 | 60S ribosomal protein L23 | 55 | 7 | 21 | 14865.9 | |
| P62750 | 60S ribosomal protein L23a | 33 | 6 | 14 | 17696.2 | |
| P83731 | 60S ribosomal protein L24 | 41 | 7 | 15 | 17779.5 | |
| P61353 | 60S ribosomal protein L27 | 36 | 4 | 9 | 15798.4 | |
| P46776 | 60S ribosomal protein L27a | 34 | 5 | 10 | 16561.4 | |
| P46779 | 60S ribosomal protein L28 | 49 | 8 | 16 | 15747.9 | |
| P39023 | 60S ribosomal protein L3 | 24 | 9 | 18 | 46109.5 | |
| P62888 | 60S ribosomal protein L30 | 51 | 4 | 9 | 12784.7 | |
| P62910 | 60S ribosomal protein L32 | 35 | 4 | 14 | 15860.4 | |
| P49207 | 60S ribosomal protein L34 | 29 | 5 | 9 | 13293.1 | |
| Q9Y3U8 | 60S ribosomal protein L36 | 35 | 5 | 12 | 12254.2 | |
| P61927 | 60S ribosomal protein L37 | 20 | 4 | 5 | 11078.2 | |
| P61513 | 60S ribosomal protein L37a | 59 | 5 | 12 | 10275.4 | |
| P36578 | 60S ribosomal protein L4 | 36 | 13 | 28 | 47699.1 | |
| P46777 | 60S ribosomal protein L5 | 37 | 9 | 20 | 34363.5 | |
| Q02878 | 60S ribosomal protein L6 | 34 | 10 | 26 | 32729.3 | |
| P18124 | 60S ribosomal protein L7 | 40 | 10 | 22 | 29227.7 | |
| P62424 | 60S ribosomal protein L7a | 40 | 9 | 22 | 29996.3 | |
| P62917 | 60S ribosomal protein L8 | 22 | 6 | 11 | 28024.8 | |
| P32969 | 60S ribosomal protein L9 | 55 | 6 | 17 | 21863.7 | |
| P11387 | DNA topoisomerase 1 | 6 | 4 | 6 | 90729.7 | |
| Q03701 | CCAAT/enhancer-binding protein ζ | 11 | 8 | 14 | 120992.2 | |
| Q13185 | Chromobox protein homolog 3 | 17 | 4 | 7 | 20812.0 | |
| O75367 | Core histone macro-H2A.1 | 28 | 7 | 14 | 39618.9 | |
| O95602 | DNA-directed RNA polymerase I subunit RPA1 | 4 | 4 | 6 | 194814.5 | |
| P68104 | Elongation factor 1-α 1 (EF-1α1) | 27 | 9 | 25 | 50141.2 | |
| P13639 | Elongation factor 2 (EF-2) | 17 | 10 | 24 | 95340.1 | |
| P60842 | Eukaryotic initiation factor 4A-I | 21 | 7 | 12 | 46155.3 | |
| P05198 | Eukaryotic translation initiation factor 2 subunit 1 | 27 | 8 | 15 | 36112.7 | |
| P63241 | Eukaryotic translation initiation factor 5A-1 | 39 | 4 | 8 | 16832.7 | |
| Q5SSJ5 | Heterochromatin protein 1-binding protein 3 | 16 | 7 | 11 | 61208.7 | |
| Q99729 | Heterogeneous nuclear ribonucleoprotein A/B | 11 | 4 | 7 | 36225.2 | |
| O14979 | Heterogeneous nuclear ribonucleoprotein D-like | 15 | 4 | 8 | 46438.6 | |
| Q14103 | Heterogeneous nuclear ribonucleoprotein D0 | 23 | 8 | 15 | 38434.5 | |
| P52926 | High mobility group protein HMGA2 | 58 | 5 | 17 | 11831.9 | |
| Q12905 | Interleukin enhancer-binding factor 2 | 62 | 16 | 80 | 43062.7 | |
| Q12906 | Interleukin enhancer-binding factor 3 | 15 | 12 | 18 | 95338.9 | |
| P43243 | Matrin-3 | 50 | 30 | 107 | 94626.7 | |
| Q9BQG0 | Myb-binding protein 1A | 28 | 31 | 80 | 148858.3 | |
| Q13765 | Nascent polypeptide-associated complex subunit α | 26 | 4 | 7 | 23383.3 | |
| P17480 | Nucleolar transcription factor 1 | 20 | 14 | 33 | 89409.6 | |
| P55209 | Nucleosome assembly protein 1-like 1 | 36 | 8 | 24 | 45375.0 | |
| Q9H307 | Pinin | 37 | 22 | 56 | 81613.2 | |
| P51531 | Probable global transcription activator SNF2L2 | 9 | 10 | 22 | 181283.0 | |
| Q8IZL8 | Proline-, glutamic acid- and leucine-rich protein 1 | 15 | 11 | 22 | 119700.6 | |
| P35659 | Protein DEK | 22 | 8 | 15 | 42675.9 | |
| Q8N7H5 | RNA polymerase II-associated factor 1 homolog | 15 | 6 | 12 | 59976.0 | |
| Q15424 | Scaffold attachment factor B1 | 21 | 14 | 30 | 102642.8 | |
| Q92922 | SWI/SNF complex subunit SMARCC1 | 22 | 18 | 42 | 122867.4 | |
| Q969G3 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 | 30 | 11 | 29 | 46649.7 | |
| Q9Y2W1 | Thyroid hormone receptor-associated protein 3 | 13 | 12 | 33 | 108668.9 | |
| P51532 | Transcription activator BRG1 | 11 | 14 | 28 | 184649.6 | |
| Q5BKZ1 | Zinc finger protein 326 | 33 | 14 | 34 | 65653.5 | |
|
| ||||||
| Q9NVI7 | ATPase family AAA domain-containing protein 3A | 7 | 4 | 6 | unknown | 71370.2 |
| P55081 | Microfibrillar-associated protein 1 | 17 | 5 | 10 | 51958.7 | |
| Q9Y3T9 | Nucleolar complex protein 2 homolog | 30 | 19 | 70 | 84907.1 | |
| O94880 | PHD finger protein 14 | 6 | 4 | 7 | 100055.1 | |
| Q96GQ7 | Probable ATP-dependent RNA helicase DDX27 | 17 | 12 | 20 | 89838.1 | |
| Q9H0S4 | Probable ATP-dependent RNA helicase DDX47 | 11 | 4 | 9 | 50648.4 | |
| Q9Y4W2 | Protein LAS1 homolog | 22 | 13 | 28 | 83065.5 | |
| Q9BXY0 | Protein MAK16 homolog | 50 | 12 | 30 | 35370.0 | |
| Q5JTH9 | RRP12-like protein | 5 | 4 | 6 | 143705.1 | |
| Q15061 | WD repeat-containing protein 43 | 37 | 20 | 106 | 74890.8 | |