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To assess the methods we used five different macromolecular complexes selected from the PDB and used previously as a test set (Berman et al., 2000).
| PDB ID | Description |
|---|---|
| 1BXR | Carbamoyl phosphate synthetase complexed with the ATP analog AMPPNP |
| 1KP8 | GroEL-KMgATP |
| 1W6T | Octameric enolase from S. pneumoniae |
| 1YG6 | ClpP |
| 2AWB | 50s subunit of E. coli ribosome. |
