Table 1.
Sample | Raw Reads | Clean reads | Clean bases | Error(%) | Q20(%) | Q30(%) | GC(%) |
---|---|---|---|---|---|---|---|
CK_0h_1 | 46,798,272 | 44,621,416 | 6.69G | 0.02 | 95.18 | 89.01 | 46.95 |
CK_0h_2 | 45,107,014 | 43,159,672 | 6.47G | 0.02 | 95.31 | 89.26 | 46.96 |
CK_0h_3 | 45,874,828 | 44,106,108 | 6.62G | 0.02 | 95.5 | 89.54 | 46.63 |
WL_3h_1 | 54,417,084 | 52,087,158 | 7.81G | 0.02 | 95.14 | 88.93 | 45.63 |
WL_3h_2 | 45,655,674 | 43,708,280 | 6.56G | 0.02 | 95.1 | 88.87 | 45.74 |
WL_3h_3 | 53,722,372 | 51,549,180 | 7.73G | 0.02 | 95.34 | 89.27 | 46.09 |
WL_6h_1 | 53,385,772 | 50,952,524 | 7.64G | 0.02 | 95.05 | 88.81 | 46.39 |
WL_6h_2 | 57,430,360 | 54,787,486 | 8.22G | 0.02 | 94.91 | 88.53 | 45.75 |
WL_6h_3 | 53,239,000 | 51,043,882 | 7.66G | 0.02 | 95.34 | 89.3 | 46.96 |
WL_24h_1 | 49,054,868 | 46,282,834 | 6.94G | 0.02 | 95.52 | 89.59 | 46.34 |
WL_24h_2 | 57,973,622 | 54,699,464 | 8.2G | 0.03 | 94.52 | 87.62 | 47 |
WL_24h_3 | 54,545,036 | 51,479,552 | 7.72G | 0.02 | 95.32 | 89.23 | 46.3 |
Sumary | 617,203,902 | 588,477,556 | 88.26G |
Q20: The percentage of bases with a Phred value >20
Q30: The percentage of bases with a Phred value >30
GC GC content