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. Author manuscript; available in PMC: 2018 Sep 1.
Published in final edited form as: Bioorg Med Chem Lett. 2017 Jul 12;27(17):4133–4139. doi: 10.1016/j.bmcl.2017.07.035

Table 1.

List of seed molecules and their template copied using global or local similarities.

Pocket PDB ID Ligand ID Npkt Naligned TM-Score P-value (Pocket) Npred Nhit
PKT1 3V5L 0G1 15 15 0.27 0.001 5 1
4BDK RQQ 12 12 0.25 0.008 10 3
1QCA FUA 12 11 0.33 0.003 8 0
PKT2 4YKA TYC 12 11 0.36 0.002 11 0
4J93 0OE 10 10 0.30 0.0003 10 2
PKT3 2XZG VH1 13 12 0.61 N/A 5 0
4G55 VH2 12 11 0.61 N/A 3 0
PKT4 4MSL 2ET 15 11 0.50 N/A 4 1

Npkt: Number of the template PDB amino acids in contact with its ligand.

Naligned: Number of the amino acids that are aligned to Myocilin’s structure.

Npred: Number of predictions from the NCI diversity set.

Nhit: Number of cases showing a positive thermal shift.