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. 2017 Aug 18;16(Suppl 1):71. doi: 10.1186/s12938-017-0362-7

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© The Author(s) 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Comparison of contact maps at different modeling stages and the experimental complex structure for EphB4-EphrinB2 interaction. The figures show maps of contacts formed between the SLiM fragment localized on EphrinB2 and the protein EphB4 receptor for: a CABS-dock prediction, b superimposition, c final refinement, and d a reference map for the experimental complex structure (PDB ID: 2HLE). The maps were calculated with COCOMAPS tool [45] with default settings (cut-off distance of 8 Å)