Table 2.
Input data for CABS-dock protein–peptide docking using information about side-chain contacts
| PDB | Receptor chain | Peptide sequence | ID of contact residues | |
|---|---|---|---|---|
| Receptor | Peptide | |||
| 2v3s | B | GRFQVT | 449 | 4 |
| 2vj0 | A | PKGWVTFE | 782 | 3 |
| 2zjd | A | GGDDDWTHLS | 35 | 9 |
| 3bfq | G | ADSTITIRGYVRDNR | 117 | 5 |
| 3bu3 | A | YNPYPEDYGDIEIG | 1181 | 11 |
| 3bwa | A | FPTKDVAL | 66 | 1 |
| 3cvp | A | NRASKL | 557 | 4 |
| 3d1e | A | GQLGLF | 364 | 1 |
| 3d9t | B | ATPFQE | 307 | 4 |
Single contacts were randomly selected from native contacts (defined using 5 Å distance cut-off based on positions of heavy atoms)