Table 3.
Prevalence and proportion of total reads for “species” detected in at least 50% of samples.
| Nearest neighboura | % OTU identity range | Prevalence/182 (%) | % total reads |
|---|---|---|---|
| Lactobacillus jensenii | 81.6–100 | 181 (99.4) | 10.66 |
| Streptococcus devriesei | 83 | 180 (98.9) | 0.34 |
| Lactobacillus crispatus | 78.8–99.8 | 178 (97.8) | 31.93 |
| Lactobacillus acidophilus | 91.8–100 | 178 (97.8) | 1.22 |
| Atopobium vaginae | 82.5–96.9 | 176 (96.7) | 1.62 |
| Weissella viridescens | 58.8–99.5 | 173 (95.0) | 0.22 |
| Desulfotalea psychrophila | 76.1 | 167 (91.7) | 0.12 |
| Lactobacillus iners | 86.8–100 | 165 (90.6) | 15.85 |
| Lactobacillus gasseri | 65.4–100 | 164 (90.1) | 5.69 |
| Streptococcus parasanguinis | 94.9–97.0 | 162 (89.0) | 0.08 |
| Prevotella tannerae | 77.5–98.7 | 162 (89.0) | 0.07 |
| Faecalibacterium cf. prausnitzii | 77.5–79.6 | 159 (87.3) | 0.16 |
| Gardnerella vaginalis subgroup C | 78.5–99.3 | 156 (85.7) | 4.45 |
| Peptoniphilus harei | 89.9–98.5 | 156 (85.7) | 0.07 |
| Clostridium innocuum | 75.4 | 148 (81.3) | 0.06 |
| Sphingobium yanoikuyae | 99.3–99.4 | 145 (79.6) | 0.08 |
| Eubacterium siraeum | 84.4 | 144 (79.1) | 0.05 |
| Gardnerella vaginalis subgroup B | 93.2–99.6 | 133 (73.0) | 0.54 |
| Massilia timonae | 82 | 126 (69.2) | 0.03 |
| Gardnerella vaginalis subgroup A | 86.7–99.6 | 123 (67.5) | 7.64 |
| Bifidobacterium breve | 89.6–99.5 | 119 (65.3) | 2.12 |
| Megasphaera sp. genomsp. type 1 | 58.1–86.7 | 112 (61.5) | 3.09 |
aClosest match in the cpnDB reference database based on sequence identity.