Table 2.
miRNA clusters identified by our analysis.
| ID | miRNA gene | Chromosome | Conservation |
|---|---|---|---|
| 1 | fca-mir-15a, fca-mir-16-2 | chrA1 | hsa: chr13 ~, cfa: chr22 ~ |
| 2 | fca-mir-17, fca-mir-18a, fca-mir-20a, fca-mir-20a, fca-mir-19b, fca-mir-92a | chrA1 | hsa: chr13, cfa: chr22 |
| 3 | fca-mir-302d-1, fca-mir-295, fca-mir-371 | chrE2 | — |
| 4 | fca-let-7e, fca-mir-99b | chrE2 | hsa: chr19, cfa: chr1 |
| 5 | fca-mir-24-2, fca-mir-27a | chrA2 | hsa: chr19 ~, cfa: chr20 ~ |
| 6 | fca-mir-181c, fca-mir-181d | chrA2 | hsa: chr19, cfa: chr20 |
| 7 | fca-mir-182, fca-mir-96, fca-mir-183 | chrA2 | hsa: chr7, cfa: chr14 |
| 8 | fca-mir-153-2, fca-mir-chrA2_6163 | chrA2 | — |
| 9 | fca-mir-337, fca-mir-433, fca-mir-127, fca-mir-432 | chrB3 | hsa: chr14 |
| 10 | fca-mir-379, fca-mir-411 | chrB3 | hsa: chr14, cfa: chr8 |
| 11 | fca-mir-299a, fca-mir-380, fca-mir-323a, fca-mir-758, fca-mir-329, fca-mir-543, fca-mir-495, fca-mir-3958, fca-mir-376a-3, fca-mir-376c, fca-mir-376a-2, fca-mir-654, fca-mir-376ac, fca-mir-376a-1, fca-mir-1185, fca-mir-381, fca-mir-487b, fca-mir-889, fca-mir-655, fca-mir-3959, fca-mir-487a, fca-mir-382, fca-mir-134, fca-mir-485, fca-mir-323b, fca-mir-377, fca-mir-409, fca-mir-410, fca-mir-656, fca-mir-758, fca-mir-329, fca-mir-543, fca-mir-495, fca-mir-3958, fca-mir-376a-3, fca-mir-376c, fca-mir-376a-2, fca-mir-654, fca-mir-376ac, fca-mir-376a-1, fca-mir-1185, fca-mir-381, fca-mir-487b, fca-mir-889, fca-mir-655, fca-mir-3959, fca-mir-487a, fca-mir-382, fca-mir-134, fca-mir-485, fca-mir-323b, fca-mir-377, fca-mir-409, fca-mir-410, fca-mir-656 | chrB3 | hsa: chr14 ~, cfa: chr8 ~ |
| 12 | fca-mir-221, fca-mir-222 | chrX | hsa: chrX, cfa: chrX |
| 13 | fca-mir-532, fca-mir-188, fca-mir-362, fca-mir-660, fca-mir-502 | chrX | hsa: chrX, cfa: chrX |
| 14 | fca-mir-363, fca-mir-20b, fca-mir-18b, fca-mir-106a | chrX | hsa: chrX, cfa: chrX |
| 15 | fca-mir-450b, fca-mir-542, fca-mir-503, fca-mir-424 | chrX | hsa: chrX, cfa: chrX |
| 16 | fca-mir-chrX_38640, fca-mir-chrX_38642 | chrX | — |
| 17 | fca-mir-506, fca-mir-507a | chrX | hsa: chrX ~, cfa: chrX |
| 18 | fca-mir-508, fca-mir-507b, fca-mir-514, fca-mir-8908n | chrX | hsa: chrX ~, cfa: chrX ~ |
| 19 | fca-mir-195, fca-mir-497 | chrE1 | hsa: chr17, cfa: chr5 |
| 20 | fca-let-7a-1, fca-mir-100 | chrD1 | hsa: chr11 ~ |
| 21 | fca-mir-214, fca-mir-199a-1 | chrF1 | hsa: chr1 ~, cfa: chr7 ~ |
| 22 | fca-mir-181b-1, fca-mir-181a-1 | chrF1 | hsa: chr9, cfa: chr9 |
| 23 | fca-mir-215, fca-mir-194 | chrF1 | hsa: chr1 ~, cfa: chr38 |
| 24 | fca-mir-133a-1, fca-mir-chrA3_7330, fca-mir-1-1 | chrA3 | hsa: chr18 ~, cfa: chr7 ~ |
| 25 | fca-mir-133a-2, fca-mir-1-2 | chrD3 | hsa: chr18 ~ |
| 26 | fca-mir-25, fca-mir-93, fca-mir-106b | chrE3 | hsa: chr7, cfa: chr6 |
| 27 | fca-mir-23b, fca-mir-27b, fca-mir-24-1 | chrD4 | hsa: chr9, cfa: chr1 |
| 28 | fca-mir-181a-2, fca-mir-181b-2 | chrD4 | hsa: chr1, cfa: chr7 |
| 29 | fca-mir-200a, fca-mir-429 | chrC1_JH408690_random | hsa: chr1, cfa: chr5 |
| 30 | fca-let-7c-2, fca-mir-99a | chrC2 | hsa: chr21 ~, cfa: chr31 ~ |
| 31 | fca-mir-16-1, fca-mir-15b | chrC2 | hsa: chr13 ~, cfa: chr22 ~ |