Table 4.
Information on eight SNPs associated with salt-tolerance related traits based on GWAS analysis
| Traitsa | SNPs | Chr. | Position (bp) | Allele | MAF | -Log10(P) | Allele's effect |
|---|---|---|---|---|---|---|---|
| RCC | TM57102 | D5 | 8,908,622 | A/G | 0.36(G) | 5.23 | 0.06 |
| TM57104 | D5 | 8,918,010 | A/C | 0.14(C) | 5.23 | 0.06 | |
| RMDA | TM5633 | A2 | 80,274,022 | A/G | 0.18(A) | 5.00 | −0.28 |
| TM70162 | D9 | 3,595,148 | A/G | 0.47(A) | 6.53 | −0.13 | |
| TM70169 | D9 | 3,793,378 | A/C | 0.48(A) | 6.53 | −0.13 | |
| TM70170 | D9 | 3,801,945 | A/G | 0.47(A) | 6.53 | −0.13 | |
| TM70171 | D9 | 3,812,331 | A/T | 0.47(T) | 6.53 | −0.13 | |
| RGR | TM43002 | A12 | 84,233,507 | A/G | 0.17(G) | 5.34 | 0.13 |
a RCC relative chlorophyll content, RMDA relative MDA content, RGR relative germination rate