Table 1.
Chromosome-wise association for scrotal circumference (SC210), age at first (AFC) and second calving (ASC)
| Trait | Genes | SNP Reference | Chr:Pos | Distance to gene | P-value (Min-Max) |
|---|---|---|---|---|---|
| SC210 | SMIM23 | rs135355728a | 20:3.48 | 14.22 | 8.96E-06 |
| SC210 | PAPD7 | rs137042056a, rs136276163a | 20:66.52..66.53 | 48.62..38.66 | 5.85E-06-p2.32E-05 |
| SC210 | ICE1 | rs41582170b | 20:67.81 | 0.00 | 2.13E-05 |
| SC210 | LOC101907249 | rs136535499a | 20:69.05 | 240.87 | 2.13E-05 |
| SC210 | EDARADD | rs110746860b, rs110371081b, rs109902875b, rs110870694b, rs110610232b, rs134356559b, rs210911576b | 28:9.14..28:9.16 | 0.00 | 6.71E-06-5.76E-05 |
| AFC | NXPH1 | rs133411648a | 4:17.46 | 45.77 | 8.26E-07 |
| AFC | EXOC4 | rs110606254a | 4:98.31 | 0.00 | 1.74E-06 |
| AFC | ZMAT4 | rs134390082a, rs137553882a, rs133519327a, rs135481346a | 27:35.19..35.21 | 48.32..29.34 | 1.23E-05-3.18E-05 |
| ASC | FMN1 | rs134100268b | 10:29.88 | 0.00 | 2.43E-06 |
| ASC | TMEM182 | rs43661848a | 11:7.69 | 197.15 | 6.29E-06 |
| ASC | LOC790871 | rs136610615a | 11:22.29 | 69.94 | 2.77E-06 |
| ASC | UBQLN3 | rs43031470c | 15:48.70 | 0.00 | 3.39E-06 |
aintergenic region
bintron variant
cexon variant
Gene symbols, SNP reference number, and chromosomes (Chr) and positions (Pos, in megabase) were obtained from NCBI website. Distances to gene (kilobase) are presented from 5′ to gene direction. If distance equals zero (0.00), the SNP is on intragenic region. P-values are presented as the minimum (Min) and maximum (Max) significance obtained from the generalized quasi-likelihood method