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. 2017 May 23;6(7):1–13. doi: 10.1093/gigascience/gix039

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© The Authors 2017. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3: — Phylogenetic tree and comparison of orthologous genes in M. amblycephala and other fish species. (A) Phylogenetic tree of teleosts using 316 single copy orthologous genes. The color circles at the nodes show the estimated divergence times using O. latipes–F. rubripes (96.9∼150.9 Mya), F. rubripes–D. rerio (149.85∼165.2 Mya), F. rubripes–C. milii (416∼421.75 Mya; http://www.timetree.org/) as the calibration time. The pentagram represents 4 cyprinid fish with intermuscular bones. S: Silurian period; D: Devonian period; C: Carboniferous period; P: Permian period in Paleozoic; T: Triassic period; J: Jurassic; K: cretaceous period in Mesozoic; Pg: Paleogene in Cenozoic Era; N: Neogene. (B) Venn diagram of shared and unique orthologous gene families in M. amblycephala and 4 other teleosts. (C) Over-represented GO annotations of cyprinid-specific expansion genes.