Table 9.

Arguments of the ramachandran() function.

Argument name	Default value	Description
dihedrals	none	Matrix with angles (two columns). Generated by function load_ramachandran().
xBins	150	Number of bins used to plot (x-axis).
yBins	150	Number of bins used to plot (y-axis).
heatFun	“norm”	Function selector for calculation of the colour. The possibilities are either: “norm” for linear calculation or “log” for logarithmic calculation.
structureAreas	c()	List of areas, which are plotted as black lines.
plotType	“sparse”	Type of plot to be used, either “sparse” (default, using function hist2d()), “comic” (own binning, supports very few datapoints), or “fancy” (3D, using function persp()).
printLegend	FALSE	A Boolean specifying whether a heat legend is to be plotted or not.
plotContour	FALSE	A Boolean specifying whether a contour should be added or not.
barePlot	FALSE	A Boolean indicating whether the plot is to be made without any additional information.
…	none	Additional arguments.