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| Intra-Sample | Genes | Concordance | Isoforms | Concordance |
| Fetal RPE (fRPE) | 86 | 0.93 | 245 | 0.93 |
| iPS-RPE | 85 | 0.98 | 235 | 0.97 |
| iPS | 62 | 0.99 | 164 | 0.98 |
| Inter-Sample | Genes | Concordance | Isoforms | Concordance |
| fRPE:iPS-RPE | 85 | 0.91 | 234 | 0.93 |
| fRPE:iPS | 62 | 0.03 | 163 | 0.16 |
| iPS:iPS-RPE | 61 | 0.02 | 160 | 0.19 |
