Table 1.
Genomic information for bacteria isolated in this study. Strains are named according to their origin: Dm denotes isolation from D. melanogaster while Ds denotes isolation from D. suzukii. L denotes isolation from laboratory reared flies while W denotes isolation from wild flies. Pairwise APNI calculations were performed using whole genome sequences of each isolate and whole genome sequences from Acetobacteraceae in the NCBI Genomes database. The genome-sequenced Acetobacteraceae with the highest APNI value is listed on the right.
| Organism | Strain | Genome annotation information | Taxonomic assignment support | |||
|---|---|---|---|---|---|---|
|
| ||||||
| Est. Size (bp) | % GC | CDS | Highest APNI | Organism | ||
| Acetobacter tropicalis | DmW_042 | 3838696 | 55.3 | 3725 | 98.26±2.19 | Acetobacter tropicalis DmCS_006 |
| Acetobacter | DmW_043 | 2646624 | 50.8 | 2500 | 89.58±3.48 | Commensalibacter intestini A911 |
| Acetobacter orientalis | DmW_045 | 2870141 | 52.4 | 2784 | 97.95±1.79 | Acetobacter orientalis 21F-2 |
| Acetobacter indonesiensis | DmW_046 | 3192175 | 53.9 | 3041 | 96.9±2.26 | Acetobacter indonesiensis 5H-1 |
| Acetobacter cibinongensis | DmW_047 | 3242718 | 54.3 | 3168 | 97.06±2.18 | Acetobacter cibinongensis 4H-1 |
| Acetobacter orientalis | DmW_048 | 2747319 | 53.7 | 2660 | 97.85±1.64 | Acetobacter orientalis 21F-2 |
| Acetobacter tropicalis | DmL_050 | 4049721 | 55.7 | 4036 | 97.69±2.04 | Acetobacter tropicalis NBRC 101654 |
| Acetobacter indonesiensis | DmL_051 | 3326569 | 53.9 | 3041 | 98.16±2.16 | Acetobacter indonesiensis 5H-1 |
| Commensalibacter intestini | DmL_052 | 2436068 | 36.8 | 2211 | 99.03±2.3 | Commensalibacter intestini A911 |
| Acetobacter persici | DmL_053 | 3353733 | 58.0 | 3162 | 96.48±2.39 | Acetobacter persici JCM 25330 |
| Acetobacter | DsW_054 | 2716859 | 58.3 | 2578 | 89.92±4.28 | Acetobacter okinawensis JCM 25146 |
| Gluconobacter | DsW_056 | 3175732 | 59.7 | 2997 | 89.55±2.19 | Gluconobacter oxydans 621H |
| Acetobacter malorum | DsW_057 | 3090075 | 57.8 | 2856 | 92.65±3.45 | Acetobacter malorum DmCS_004 |
| Gluconobacter | DsW_058 | 2834931 | 55.8 | 2762 | 89.92±4.98 | Gluconobacter frateurii NBRC 103465 |
| Acetobacter | DsW_059 | 2707336 | 50.6 | 2610 | 89.65±3.47 | Commensalibacter intestini A911 |
| Acetobacter okinawensis | DsW_060 | 2726408 | 58.1 | 2665 | 95.48±3.28 | Acetobacter okinawensis JCM 25146 |
| Acetobacter orientalis | DsW_061 | 2959558 | 52.4 | 2802 | 97.93±1.18 | Acetobacter orientalis 21F-2 |
| Acetobacter nitrogenifigens | DsW_063 | 3040614 | 60.1 | 3041 | 92.9±3.61 | Acetobacter nitrogenifigens DSM 23921 |