Table 1.
Abundance and prevalence of O. formigenes-related OTUs in the American Gut Project
| OTU ID | Closed-reference OTU picking | Open-reference OTU pickinga | ||||
|---|---|---|---|---|---|---|
| Counts%/cumulative counts% | % of colonization | Counts%/cumulative counts% | % of colonization | |||
| 8610 samples | 7293 subjects | 8441 samples | 7115 subjects | |||
| 7366 | 96.43/96.43 | 27.55 | 30.25 | 90.90/90.90 | 27.26 | 30.01 |
| 360508 | 3.48/99.91 | 7.03 | 7.84 | 2.04/92.93 | 5.01 | 5.68 |
| New.CleanUp.ReferenceOTU314026 | – | – | – | 0.77/93.70 | 2.11 | 2.42 |
| 2641606 | – | – | – | 0.76/94.45 | 1.39 | 1.57 |
| New.ReferenceOTU11344 | – | – | – | 0.68/95.13 | 1.91 | 2.26 |
| 3488180 | – | – | – | 0.55/95.68 | 1.77 | 2.05 |
| New.CleanUp.ReferenceOTU2018399 | – | – | – | 0.50/96.18 | 1.45 | 1.64 |
| New.CleanUp.ReferenceOTU6125098 | – | – | – | 0.23/96.41 | 0.65 | 0.77 |
| 4474081 | – | – | – | 0.21/96.62 | 0.57 | 0.62 |
| New.CleanUp.ReferenceOTU9098367 | – | – | – | 0.20/96.81 | 0.60 | 0.69 |
| New.CleanUp.ReferenceOTU781422 | – | – | – | 0.19/97.00 | 0.58 | 0.69 |
| 191145 | – | – | – | 0.15/97.15 | 0.53 | 0.62 |
| New.CleanUp.ReferenceOTU5660629 | – | – | – | 0.10/97.25 | 0.31 | 0.37 |
| 7369 | 0.09/100.00 | 0.34 | 0.38 | 0.10/97.35 | 0.39 | 0.45 |
| Control: B. fragilis OTU 4479397 | – | 30.00 | 35.00 | – | 45.00 | 49.00 |
OTUs were ordered from the highest to lowest sequencing read number
aA total of 260 O. formigenes-related OTUs were detected with open-reference OTU picking, and only the 14 most abundant OTUs, representing 97.35% of all counts, are shown in this table