Table 1. Summary statistics for assembled contigs from different organs of C. quadricarinatus, C. destructor and C. cainii.
Summary statistics for assembled contigs greater than 200 bp generated from different organs of Cherax quadricarinatus (Redclaw), C. destructor (Yabby) and C. cainii (Marron) using Trinity de novo assembler and cd-HIT clustering tool.
| Summary statistics | Redclaw | Yabby | Marron | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Gills | Hepato- pancreas | Heart | Kidney | Liver | Nerve | Testes | Gills | Gills | |
| Total reads (million) | 72.3 | 65 | 47 | 63 | 51 | 64 | 62 | 100 | 83.9 |
| Number of total contigs | 87,290 | 67,401 | 38,938 | 66,308 | 47,166 | 66,564 | 63,924 | 136,622 | 147,101 |
| N50 | 725 | 398 | 720 | 1,033 | 705 | 1,190 | 995 | 1,326 | 1,380 |
| Mean contig length | 563 | 386 | 554 | 663 | 548 | 716 | 653 | 740 | 747 |
| Length of the longest contig | 15,028 | 9,532 | 16,343 | 15,021 | 17,690 | 20,121 | 16,889 | 17,725 | 22,324 |
| Number of contigs longer than 500 bp | 27,973 | 12,055 | 10,129 | 22,622 | 13,665 | 23,290 | 19,642 | 49,678 | 52,459 |
| Number of contigs longer than 1,500 bp | 5,274 | 0 | 2,048 | 6,264 | 2,867 | 6,670 | 5,050 | 16,178 | 17,486 |
| Number of clusters | 24,123 | 21,732 | 23,127 | 19,816 | 22,963 | 22,837 | 22,989 | 18,113 | 18,325 |
| Blast Success rate (%) | 25.3 | 35 | 31.2 | 25.9 | 27.7 | 27.1 | 27.4 | 17 | 18 |