Table 1.
Characteristics of soybean SUMO pathway genes.
| Group | Gene Name | Locus Name | Chromosome | Gene length (bp) | Number of Exon | Basic features of Protein | Subcellular location | ||
|---|---|---|---|---|---|---|---|---|---|
| Length (aa) | MW (Da) | pI | |||||||
| SUMO | GmSUMO1 | Glyma.08G320500 | 8 | 300 | 3 | 99 | 11,203.5 | 4.71 | mito: 6, nucl: 5, cyto: 1, plas: 1 |
| GmSUMO2 | Glyma.18G165200 | 18 | 345 | 3 | 114 | 12,969.1 | 5.58 | nucl: 8, cyto: 2, chlo: 1, mito: 1, plas: 1 | |
| GmSUMO3 | Glyma.08G350600 | 8 | 354 | 3 | 117 | 13,210.6 | 5.68 | nucl: 10, cyto: 2, chlo: 1 | |
| GmSUMO4 | Glyma.08G111700 | 8 | 321 | 3 | 106 | 12,199.7 | 6.67 | nucl: 7, cyto: 5, extr: 2 | |
| GmSUMO5 | Glyma.08G111,800 | 8 | 297 | 3 | 98 | 11,115.8 | 9.14 | cyto: 5, nucl: 4, chlo: 2, mito: 2 | |
| GmSUMO6 | Glyma.05G154000 | 5 | 297 | 3 | 98 | 11,144 | 9.59 | nucl: 6, cyto: 5, mito: 2 | |
| GmSUMO1 | Glyma.08G320500 | 8 | 300 | 3 | 99 | 11,203.5 | 4.71 | mito: 6, nucl: 5, cyto: 1, plas: 1 | |
| GmSUMO2 | Glyma.18G165200 | 18 | 345 | 3 | 114 | 12,969.1 | 5.58 | nucl: 8, cyto: 2, chlo: 1, mito: 1, plas: 1 | |
| E1 | GmSAE1a | Glyma.08G011400 | 8 | 846 | 9 | 281 | 31,131.4 | 5.28 | extr: 11, cyto: 2 |
| GmSAE1b | Glyma.05G204000 | 5 | 996 | 10 | 331 | 36,839.8 | 5.56 | nucl: 6, cyto: 6, mito: 1 | |
| GmSAE2a | Glyma.13G201500 | 13 | 2,052 | 11 | 683 | 70,966 | 4.94 | chlo: 4, plas: 3, nucl: 2, E.R.: 2, cyto: 1, extr: 1 | |
| GmSAE2b | Glyma.12G236000 | 12 | 1,911 | 11 | 636 | 70,911.1 | 5.03 | chlo: 5, plas: 3, nucl: 2, cyto: 1, vacu: 1, E.R.: 1 | |
| E2 | GmSCEa | Glyma.11G053300 | 11 | 480 | 5 | 159 | 18,000.3 | 8.47 | nucl: 7, cyto: 3, mito: 2, plas: 2 |
| GmSCEb | Glyma.01G188900 | 1 | 480 | 5 | 159 | 18,000.3 | 8.47 | nucl: 7, cyto: 3, mito: 2, plas: 2 | |
| GmSCEc | Glyma.17G169700 | 17 | 483 | 5 | 160 | 18,067.4 | 8.47 | nucl: 10, plas: 2, cyto: 1 | |
| GmSCEd | Glyma.05G091100 | 5 | 483 | 5 | 160 | 18,067.4 | 8.47 | nucl: 10, plas: 2, cyto: 1 | |
| E3 | GmSIZ1a | Glyma.12G071300 | 12 | 2,643 | 16 | 880 | 95,834.9 | 4.89 | nucl: 13 |
| GmSIZ1b | Glyma.U020100 | – | 2,640 | 16 | 879 | 95,988.2 | 4.83 | nucl: 13 | |
| GmSIZ1c | Glyma.12G170900 | 12 | 2,649 | 16 | 882 | 96,853.1 | 4.75 | nucl: 12, cyto: 2 | |
| GmSIZ1d | Glyma.13G328100 | 13 | 2,643 | 17 | 880 | 96,878.1 | 4.78 | nucl: 12, cyto: 2 | |
| GmMMS21 | Glyma.13G273500 | 13 | 744 | 7 | 247 | 27,767.8 | 4.74 | chlo: 10.5, chlo_mito: 7, mito: 2.5 | |
| GmPIAL1 | Glyma.11G020900 | 11 | 2,631 | 16 | 876 | 95,516.7 | 7.54 | chlo: 10, pero: 2, nucl: 1 | |
| GmPIAL2 | Glyma.01G222500 | 1 | 2,631 | 16 | 876 | 95,665.8 | 7.7 | nucl: 7, chlo: 4, cysk: 2 | |
| SUMO Chain binding protein | GmCBa | Glyma.11G103800 | 11 | 618 | 4 | 205 | 23,015.4 | 9.21 | nucl: 5, mito: 4, chlo: 3, cyto: 1 |
| GmCBb | Glyma.12G028700 | 12 | 618 | 4 | 205 | 23,149.5 | 9.21 | chlo: 6, nucl: 4, cyto: 2, mito: 2 | |
| GmCBc | Glyma.20G004500 | 20 | 405 | 4 | 134 | 14,955.4 | 8.79 | Unknown | |
| GmCBd | Glyma.09G281300 | 9 | 621 | 4 | 206 | 23,152.8 | 6.5 | nucl: 11, cyto: 1, mito: 1 | |
| Ubiquitin like protease | GmPROa | Glyma.04G193100 | 4 | 945 | 7 | 314 | 36,882.6 | 10.2 | cyto: 7, chlo: 2, E.R.: 2, golg: 2 |
| GmOTSa | Glyma.18G137700 | 18 | 1,761 | 14 | 586 | 67,944 | 6.95 | nucl: 13 | |
| GmOTSb1 | Glyma.08G287800 | 8 | 1,131 | 10 | 376 | 43,485.7 | 7.76 | nucl: 13 | |
| GmOTSb2 | Glyma.08G287700 | 8 | 576 | 4 | 191 | 21,854.85 | 4.9 | extr: 7, chlo: 2, cyto: 2, vacu: 2 | |
| GmB2a | Glyma.06G095600 | 6 | 2,874 | 16 | 957 | 10,6715.9 | 4.19 | nucl: 8, cysk: 3, plas: 1.5, golg_plas: 1.5 | |
| GmB2b | Glyma.04G093800 | 4 | 2,802 | 16 | 933 | 104,220.9 | 4.24 | nucl: 8, cysk: 3, plas: 1.5, golg_plas: 1.5 | |
| GmB2c | Glyma.15G058100 | 15 | 1,869 | 10 | 622 | 70,841.3 | 5.46 | chlo: 8, nucl: 5 | |
| GmB2d | Glyma.13G256800 | 13 | 1,932 | 16 | 643 | 93,129.9 | 4.51 | nucl: 5, mito: 4, chlo: 3, cysk: 1 | |
| GmB2e | Glyma.02G214100 | 2 | 2,166 | 9 | 721 | 83,035.8 | 4.6 | nucl: 12, cyto: 2 | |
| GmESD4a | Glyma.15G148700 | 15 | 1,410 | 9 | 470 | 54,530.6 | 8.51 | nucl: 6, cyto: 5, chlo: 2 | |
| GmESD4b | Glyma.09G044400 | 9 | 1,407 | 9 | 468 | 54,626 | 8.88 | nucl: 8, cyto: 3, chlo: 2 | |
| GmESD4c | Glyma.17G027100 | 17 | 1,503 | 9 | 500 | 57,721.8 | 9 | chlo: 8, nucl: 3, pero: 2 | |
| GmESD4d | Glyma.07G246900 | 7 | 1,539 | 9 | 512 | 59,051.9 | 8.2 | chlo: 9, nucl: 3, mito: 1 | |
bp, base pair; aa, amino acids; Da, Dalton; pI, isoeletricponit Subcellular predictions; chlo, (chloroplast); cyto, (cytosol); nucl, (nucleus); E.R., (endoplasmic reticulum); mito, (mitochondria); plas, (plasma membrane); extr, (extracellular); cysk, (cytoskeleton); plas, (plasma membrane); vacu, (vacuolar membrane); cyto, (cytoplasmic); pero, (peroxisomal); golg, (golgi).